Searching in Shewanella loihica PV-4 (PV4)
Found 14 curated entries in PaperBLAST's database that match '4.2.3.4' as complete word(s).
These curated entries have 9 distinct sequences.
Running ublast with E ≤ 0.01
Found 3 relevant proteins in Shewanella loihica PV-4, or try another query
Shew_0214: 3-dehydroquinate synthase (RefSeq) is similar to: | PaperBLAST |
AROB_ECOLI / P07639: 3-dehydroquinate synthase; DHQS; EC 4.2.3.4 from Escherichia coli | 59% id, 99% cov |
Q3M4V2: 3-dehydroquinate synthase (EC 4.2.3.4) from Trichormus variabilis | 47% id, 99% cov |
DHQS_SOLLC / Q8RU74: 3-dehydroquinate synthase, chloroplastic; EC 4.2.3.4 from Solanum lycopersicum | 54% id, 81% cov |
Shew_1952: 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) is similar to: | PaperBLAST |
ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae | 38% id, 28% cov |
ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans | 39% id, 27% cov |
Shew_3727: shikimate 5-dehydrogenase (RefSeq) is similar to: | PaperBLAST |
ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae | 30% id, 20% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 3 reading frames. These were all redundant with annotated proteins.
Lawrence Berkeley National Laboratory