Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 50 curated entries in PaperBLAST's database that match '4.3.1.17' as complete word(s).

These curated entries have 35 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_0740: L-serine dehydratase 1 (RefSeq) is similar to:	PaperBLAST
SdaA / b1814: L-serine deaminase I (EC 4.3.1.17) from Escherichia coli sdaA / P16095: L-serine deaminase I (EC 4.3.1.17) from Escherichia coli P16095: L-serine ammonia-lyase (EC 4.3.1.17) from Escherichia coli	73% id, 99% cov
SDHM_ECOLI / P30744: L-serine dehydratase 2; SDH 2; L-serine deaminase 2; L-SD2; EC 4.3.1.17 from Escherichia coli SdaB / b2797: L-serine deaminase II (EC 4.3.1.17) from Escherichia coli sdaB / GB\|AAC75839.1: L-serine dehydratase 2; EC 4.3.1.17 from Escherichia coli sdaB / P30744: L-serine deaminase II (EC 4.3.1.17) from Escherichia coli P30744: L-serine ammonia-lyase (EC 4.3.1.17) from Escherichia coli	68% id, 100% cov
YhaQ / b4471: L-serine deaminase III (EC 4.3.1.17) from Escherichia coli tdcG / P42630: L-serine deaminase III (EC 4.3.1.17) from Escherichia coli P42630: L-serine ammonia-lyase (EC 4.3.1.17) from Escherichia coli	67% id, 100% cov
Pf6N2E2_5557: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens	54% id, 99% cov
RR42_RS20080: L-serine ammonia-lyase (EC 4.3.1.17) from Cupriavidus basilensis	53% id, 99% cov
BPHYT_RS19340: L-serine ammonia-lyase (EC 4.3.1.17) from Burkholderia phytofirmans	53% id, 99% cov
AO353_15500: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens	53% id, 99% cov
PfGW456L13_4954: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens	53% id, 99% cov
Pf1N1B4_1013: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens	53% id, 99% cov
Ac3H11_929: L-serine ammonia-lyase (EC 4.3.1.17) from Acidovorax sp.	51% id, 99% cov
Q5ZXE1: L-serine ammonia-lyase (EC 4.3.1.17) from Legionella pneumophila	50% id, 99% cov
sdaA / RF\|YP_225930.1: L-serine ammonia-lyase; EC 4.3.1.17 from Corynebacterium glutamicum sdaA / Q8NQ09: L-serine dehydratase (EC 4.3.1.17) from Corynebacterium glutamicum	46% id, 97% cov
DvMF_0011: L-serine ammonia-lyase (EC 4.3.1.17) from Desulfovibrio vulgaris	40% id, 98% cov
sdhA / P33073: L-serine dehydratase α subunit (EC 4.3.1.17) from Peptoniphilus asaccharolyticus	35% id, 93% cov
sdhB / P33074: L-serine dehydratase β subunit (EC 4.3.1.17) from Peptoniphilus asaccharolyticus	25% id, 78% cov
More...

Shew_1625: L-serine dehydratase 1 (RefSeq) is similar to:	PaperBLAST
Pf6N2E2_5557: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens	59% id, 100% cov
RR42_RS20080: L-serine ammonia-lyase (EC 4.3.1.17) from Cupriavidus basilensis	58% id, 100% cov
BPHYT_RS19340: L-serine ammonia-lyase (EC 4.3.1.17) from Burkholderia phytofirmans	58% id, 100% cov
SdaA / b1814: L-serine deaminase I (EC 4.3.1.17) from Escherichia coli sdaA / P16095: L-serine deaminase I (EC 4.3.1.17) from Escherichia coli P16095: L-serine ammonia-lyase (EC 4.3.1.17) from Escherichia coli	57% id, 100% cov
PfGW456L13_4954: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens	56% id, 100% cov
Ac3H11_929: L-serine ammonia-lyase (EC 4.3.1.17) from Acidovorax sp.	56% id, 100% cov
Pf1N1B4_1013: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens	56% id, 100% cov
AO353_15500: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens	56% id, 100% cov
YhaQ / b4471: L-serine deaminase III (EC 4.3.1.17) from Escherichia coli tdcG / P42630: L-serine deaminase III (EC 4.3.1.17) from Escherichia coli P42630: L-serine ammonia-lyase (EC 4.3.1.17) from Escherichia coli	55% id, 100% cov
SDHM_ECOLI / P30744: L-serine dehydratase 2; SDH 2; L-serine deaminase 2; L-SD2; EC 4.3.1.17 from Escherichia coli SdaB / b2797: L-serine deaminase II (EC 4.3.1.17) from Escherichia coli sdaB / GB\|AAC75839.1: L-serine dehydratase 2; EC 4.3.1.17 from Escherichia coli sdaB / P30744: L-serine deaminase II (EC 4.3.1.17) from Escherichia coli P30744: L-serine ammonia-lyase (EC 4.3.1.17) from Escherichia coli	55% id, 100% cov
Q5ZXE1: L-serine ammonia-lyase (EC 4.3.1.17) from Legionella pneumophila	54% id, 100% cov
sdaA / RF\|YP_225930.1: L-serine ammonia-lyase; EC 4.3.1.17 from Corynebacterium glutamicum sdaA / Q8NQ09: L-serine dehydratase (EC 4.3.1.17) from Corynebacterium glutamicum	48% id, 100% cov
DvMF_0011: L-serine ammonia-lyase (EC 4.3.1.17) from Desulfovibrio vulgaris	44% id, 98% cov
sdhA / P33073: L-serine dehydratase α subunit (EC 4.3.1.17) from Peptoniphilus asaccharolyticus	36% id, 94% cov
sdhB / P33074: L-serine dehydratase β subunit (EC 4.3.1.17) from Peptoniphilus asaccharolyticus	32% id, 51% cov
More...

Shew_0293: threonine dehydratase (RefSeq) is similar to:	PaperBLAST
A0QY48: L-serine ammonia-lyase (EC 4.3.1.17) from Mycolicibacterium smegmatis	40% id, 91% cov
TSAL_THEMA / Q9WYJ1: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine dehydratase; EC 4.3.1.19; EC 4.3.1.17 from Thermotoga maritima	38% id, 96% cov
TD2_SOLLC / P25306: Threonine dehydratase 2 biosynthetic, chloroplastic; SlTD2; Threonine deaminase 2; EC 4.3.1.17; EC 4.3.1.19 from Solanum lycopersicum	43% id, 85% cov
TSAL_GEOSL / Q74FW6: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine/serine ammonia-lyase; EC 4.3.1.19; EC 4.3.1.17 from Geobacter sulfurreducens	36% id, 95% cov
TDCB_SALTY / P11954: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Salmonella typhimurium	37% id, 93% cov
TDCB_ECOLI / P0AGF6: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Escherichia coli Tdc / b3117: catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli tdcB / P0AGF6: catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli	37% id, 90% cov
SRR_RAT / Q76EQ0: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Rattus norvegicus	35% id, 93% cov
SRR_MOUSE / Q9QZX7: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Mus musculus	35% id, 91% cov
B1N2N4: L-serine ammonia-lyase (EC 4.3.1.17) from Entamoeba histolytica	36% id, 89% cov
SRR_ORYSJ / Q7XSN8: Serine racemase; D-serine dehydratase; D-serine ammonia-lyase; L-serine dehydratase; L-serine ammonia-lyase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Oryza sativa	36% id, 87% cov
SRR_HUMAN / Q9GZT4: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Homo sapiens	34% id, 91% cov
SDSL_HUMAN / Q96GA7: Serine dehydratase-like; L-serine deaminase; L-serine dehydratase/L-threonine deaminase; L-threonine dehydratase; TDH; Serine dehydratase 2; SDH 2; EC 4.3.1.19; EC 4.3.1.17 from Homo sapiens SDSL / Q96GA7: Serine dehydratase-like (EC 4.3.1.19; EC 4.3.1.17) from Homo sapiens Q96GA7: L-serine ammonia-lyase (EC 4.3.1.17) from Homo sapiens	33% id, 95% cov
SRR_ARATH / Q2PGG3: Serine racemase; AtSR; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 4.3.1.17; EC 4.3.1.18; EC 5.1.1.18 from Arabidopsis thaliana	33% id, 89% cov
SRR_SCHPO / O59791: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 4.3.1.17; EC 4.3.1.18; EC 5.1.1.18 from Schizosaccharomyces pombe	32% id, 91% cov
A0A0X1KHE6: L-serine ammonia-lyase (EC 4.3.1.17) from Rhizomucor miehei	33% id, 77% cov
More...

Shew_2382: cysteine synthase A (RefSeq) is similar to:	PaperBLAST
SDSL_MOUSE / Q8R238: Serine dehydratase-like; L-serine deaminase; L-serine dehydratase/L-threonine deaminase; L-threonine dehydratase; TDH; SDH; EC 4.3.1.17; EC 4.3.1.19 from Mus musculus	27% id, 81% cov
SDSL_HUMAN / Q96GA7: Serine dehydratase-like; L-serine deaminase; L-serine dehydratase/L-threonine deaminase; L-threonine dehydratase; TDH; Serine dehydratase 2; SDH 2; EC 4.3.1.19; EC 4.3.1.17 from Homo sapiens SDSL / Q96GA7: Serine dehydratase-like (EC 4.3.1.19; EC 4.3.1.17) from Homo sapiens Q96GA7: L-serine ammonia-lyase (EC 4.3.1.17) from Homo sapiens	27% id, 81% cov

Shew_2255: tryptophan synthase subunit beta (RefSeq) is similar to:	PaperBLAST
B1N2N4: L-serine ammonia-lyase (EC 4.3.1.17) from Entamoeba histolytica	28% id, 25% cov
TDCB_SALTY / P11954: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Salmonella typhimurium	25% id, 28% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory