Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 47 curated entries in PaperBLAST's database that match '4.3.1.17' as complete word(s).

These curated entries have 32 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_0740: L-serine dehydratase 1 (RefSeq)
is similar to:
PaperBLAST

SdaA / b1814: L-serine deaminase I (EC 4.3.1.17) from Escherichia coli
sdaA / P16095: L-serine deaminase I (EC 4.3.1.17) from Escherichia coli
P16095: L-serine ammonia-lyase (EC 4.3.1.17) from Escherichia coli

73% id,
99% cov

SDHM_ECOLI / P30744: L-serine dehydratase 2; SDH 2; L-serine deaminase 2; L-SD2; EC 4.3.1.17 from Escherichia coli
SdaB / b2797: L-serine deaminase II (EC 4.3.1.17) from Escherichia coli
sdaB / GB|AAC75839.1: L-serine dehydratase 2; EC 4.3.1.17 from Escherichia coli
sdaB / P30744: L-serine deaminase II (EC 4.3.1.17) from Escherichia coli
P30744: L-serine ammonia-lyase (EC 4.3.1.17) from Escherichia coli

68% id,
100% cov

YhaQ / b4471: L-serine deaminase III (EC 4.3.1.17) from Escherichia coli
tdcG / P42630: L-serine deaminase III (EC 4.3.1.17) from Escherichia coli
P42630: L-serine ammonia-lyase (EC 4.3.1.17) from Escherichia coli

67% id,
100% cov

More...

Shew_1625: L-serine dehydratase 1 (RefSeq)
is similar to:
PaperBLAST

Pf6N2E2_5557: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens

59% id,
100% cov

RR42_RS20080: L-serine ammonia-lyase (EC 4.3.1.17) from Cupriavidus basilensis

58% id,
100% cov

BPHYT_RS19340: L-serine ammonia-lyase (EC 4.3.1.17) from Burkholderia phytofirmans

58% id,
100% cov

More...

Shew_0293: threonine dehydratase (RefSeq)
is similar to:
PaperBLAST

A0QY48: L-serine ammonia-lyase (EC 4.3.1.17) from Mycolicibacterium smegmatis

40% id,
91% cov

TD2_SOLLC / P25306: Threonine dehydratase 2 biosynthetic, chloroplastic; SlTD2; Threonine deaminase 2; EC 4.3.1.17; EC 4.3.1.19 from Solanum lycopersicum

43% id,
85% cov

TSAL_GEOSL / Q74FW6: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine/serine ammonia-lyase; EC 4.3.1.19; EC 4.3.1.17 from Geobacter sulfurreducens

36% id,
95% cov

More...

Shew_2382: cysteine synthase A (RefSeq)
is similar to:
PaperBLAST

SDSL_MOUSE / Q8R238: Serine dehydratase-like; L-serine deaminase; L-serine dehydratase/L-threonine deaminase; L-threonine dehydratase; TDH; SDH; EC 4.3.1.17; EC 4.3.1.19 from Mus musculus

27% id,
81% cov

SDSL_HUMAN / Q96GA7: Serine dehydratase-like; L-serine deaminase; L-serine dehydratase/L-threonine deaminase; L-threonine dehydratase; TDH; Serine dehydratase 2; SDH 2; EC 4.3.1.19; EC 4.3.1.17 from Homo sapiens
SDSL / Q96GA7: Serine dehydratase-like (EC 4.3.1.19; EC 4.3.1.17) from Homo sapiens
Q96GA7: L-serine ammonia-lyase (EC 4.3.1.17) from Homo sapiens

27% id,
81% cov

Shew_2255: tryptophan synthase subunit beta (RefSeq)
is similar to:
PaperBLAST

B1N2N4: L-serine ammonia-lyase (EC 4.3.1.17) from Entamoeba histolytica

28% id,
25% cov

TDCB_SALTY / P11954: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Salmonella typhimurium

25% id,
28% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory