Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 23 curated entries in PaperBLAST's database that match '4.3.1.3' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_3756: histidine ammonia-lyase (RefSeq) is similar to:	PaperBLAST
HUTH_PSEPU / P21310: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Pseudomonas putida hutH / P21310: histidase subunit (EC 4.3.1.3) from Pseudomonas putida	70% id, 100% cov
PfGW456L13_320: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens	68% id, 100% cov
Pf6N2E2_3799: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens	68% id, 100% cov
BWI76_RS08740: Histidine ammonia-lyase (EC 4.3.1.3) from Klebsiella michiganensis	67% id, 100% cov
BPHYT_RS07555: Histidine ammonia-lyase (EC 4.3.1.3) from Burkholderia phytofirmans	62% id, 99% cov
Ac3H11_2558: Histidine ammonia-lyase (EC 4.3.1.3) from Acidovorax sp.	56% id, 99% cov
Ga0059261_3963: Histidine ammonia-lyase (EC 4.3.1.3) from Sphingomonas koreensis	54% id, 99% cov
SM_b21165: Histidine ammonia-lyase (EC 4.3.1.3) from Sinorhizobium meliloti	52% id, 99% cov
PGA1_c36340: Histidine ammonia-lyase (EC 4.3.1.3) from Phaeobacter inhibens	50% id, 96% cov
Sama_1631: Histidine ammonia-lyase (EC 4.3.1.3) from Shewanella amazonensis	44% id, 98% cov
HUTH_DICDI / Q54JI7: Probable histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Dictyostelium discoideum	43% id, 96% cov
AO356_09605: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens	41% id, 99% cov
CA265_RS22270: Histidine ammonia-lyase (EC 4.3.1.3) from Pedobacter sp.	43% id, 95% cov
Pf1N1B4_1582: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens	41% id, 96% cov
HUTH_RAT / P21213: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Rattus norvegicus	47% id, 76% cov
HUTH_HUMAN / P42357: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Homo sapiens HAL / P42357: histidase subunit (EC 4.3.1.3) from Homo sapiens P42357: histidine ammonia-lyase (EC 4.3.1.3) from Homo sapiens	46% id, 76% cov
Q6AZU6: histidine ammonia-lyase (EC 4.3.1.3) from Xenopus tropicalis	48% id, 73% cov
Q0VGW8: histidine ammonia-lyase (EC 4.3.1.3) from Xenopus laevis	47% id, 74% cov
F6RBJ7: histidine ammonia-lyase (EC 4.3.1.3) from Xenopus tropicalis	46% id, 75% cov
HUTH1_CAEEL / Q20502: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Caenorhabditis elegans	44% id, 75% cov
More...

Shew_3517: histidine ammonia-lyase (RefSeq) is similar to:	PaperBLAST
SM_b21165: Histidine ammonia-lyase (EC 4.3.1.3) from Sinorhizobium meliloti	35% id, 93% cov
Ac3H11_2558: Histidine ammonia-lyase (EC 4.3.1.3) from Acidovorax sp.	34% id, 92% cov
Ga0059261_3963: Histidine ammonia-lyase (EC 4.3.1.3) from Sphingomonas koreensis	35% id, 88% cov
BPHYT_RS07555: Histidine ammonia-lyase (EC 4.3.1.3) from Burkholderia phytofirmans	33% id, 92% cov
Sama_1631: Histidine ammonia-lyase (EC 4.3.1.3) from Shewanella amazonensis	32% id, 94% cov
HUTH_DICDI / Q54JI7: Probable histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Dictyostelium discoideum	33% id, 88% cov
CA265_RS22270: Histidine ammonia-lyase (EC 4.3.1.3) from Pedobacter sp.	30% id, 96% cov
BWI76_RS08740: Histidine ammonia-lyase (EC 4.3.1.3) from Klebsiella michiganensis	32% id, 89% cov
PGA1_c36340: Histidine ammonia-lyase (EC 4.3.1.3) from Phaeobacter inhibens	31% id, 93% cov
HUTH_PSEPU / P21310: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Pseudomonas putida hutH / P21310: histidase subunit (EC 4.3.1.3) from Pseudomonas putida	30% id, 93% cov
AO356_09605: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens	32% id, 87% cov
PfGW456L13_320: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens	31% id, 89% cov
HUTH_HUMAN / P42357: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Homo sapiens HAL / P42357: histidase subunit (EC 4.3.1.3) from Homo sapiens P42357: histidine ammonia-lyase (EC 4.3.1.3) from Homo sapiens	36% id, 77% cov
Pf6N2E2_3799: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens	32% id, 84% cov
HUTH_RAT / P21213: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Rattus norvegicus	36% id, 76% cov
F6RBJ7: histidine ammonia-lyase (EC 4.3.1.3) from Xenopus tropicalis	35% id, 77% cov
Q0VGW8: histidine ammonia-lyase (EC 4.3.1.3) from Xenopus laevis	35% id, 76% cov
HUTH1_CAEEL / Q20502: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Caenorhabditis elegans	34% id, 77% cov
Q6AZU6: histidine ammonia-lyase (EC 4.3.1.3) from Xenopus tropicalis	34% id, 76% cov
More...

Shew_2280: phenylalanine/histidine ammonia-lyase (RefSeq) is similar to:	PaperBLAST
HUTH_PSEPU / P21310: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Pseudomonas putida hutH / P21310: histidase subunit (EC 4.3.1.3) from Pseudomonas putida	28% id, 95% cov
PfGW456L13_320: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens	28% id, 96% cov
Ga0059261_3963: Histidine ammonia-lyase (EC 4.3.1.3) from Sphingomonas koreensis	27% id, 95% cov
Pf6N2E2_3799: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens	28% id, 91% cov
AO356_09605: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens	26% id, 96% cov
PGA1_c36340: Histidine ammonia-lyase (EC 4.3.1.3) from Phaeobacter inhibens	27% id, 91% cov
Sama_1631: Histidine ammonia-lyase (EC 4.3.1.3) from Shewanella amazonensis	25% id, 96% cov
Pf1N1B4_1582: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens	25% id, 96% cov
BWI76_RS08740: Histidine ammonia-lyase (EC 4.3.1.3) from Klebsiella michiganensis	27% id, 87% cov
CA265_RS22270: Histidine ammonia-lyase (EC 4.3.1.3) from Pedobacter sp.	25% id, 92% cov
HUTH_DICDI / Q54JI7: Probable histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Dictyostelium discoideum	23% id, 92% cov
Q6AZU6: histidine ammonia-lyase (EC 4.3.1.3) from Xenopus tropicalis	24% id, 76% cov
Q0VGW8: histidine ammonia-lyase (EC 4.3.1.3) from Xenopus laevis	24% id, 75% cov
F6RBJ7: histidine ammonia-lyase (EC 4.3.1.3) from Xenopus tropicalis	23% id, 75% cov
HUTH_HUMAN / P42357: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Homo sapiens HAL / P42357: histidase subunit (EC 4.3.1.3) from Homo sapiens P42357: histidine ammonia-lyase (EC 4.3.1.3) from Homo sapiens	23% id, 75% cov
HUTH_RAT / P21213: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Rattus norvegicus	23% id, 75% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory