Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 40 curated entries in PaperBLAST's database that match '4.3.3.7' as complete word(s).

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_1848: dihydrodipicolinate synthase (RefSeq) is similar to:	PaperBLAST
A5F699: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Vibrio cholerae	58% id, 100% cov
DAPA_PSEAE / Q9I4W3: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Pseudomonas aeruginosa Q9I4W3: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Pseudomonas aeruginosa	56% id, 99% cov
DAPA_ECOLI / P0A6L2: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Escherichia coli DapA / b2478: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Escherichia coli dapA / P0A6L2: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Escherichia coli P0A6L2: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Escherichia coli	52% id, 100% cov
DAPA_NEIMB / Q9JZR4: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Neisseria meningitidis Q9JZR4: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Neisseria meningitidis	48% id, 99% cov
DAPA_RHIML / Q07607: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; Protein MosA; EC 4.3.3.7 from Rhizobium meliloti Q07607: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Sinorhizobium meliloti	46% id, 99% cov
DAPA_AGRFC / Q8UGL3: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Agrobacterium fabrum Q8UGL3: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Agrobacterium tumefaciens	45% id, 99% cov
DAPA_METJA / Q57695: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Methanocaldococcus jannaschii	45% id, 100% cov
O67216: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Aquifex aeolicus	45% id, 100% cov
Q8RBI5: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Caldanaerobacter subterraneus	46% id, 98% cov
Q6G468: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Bartonella henselae	43% id, 99% cov
DAPA_THEMA / Q9X1K9: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Thermotoga maritima	41% id, 100% cov
dapA / Q04796: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Bacillus subtilis	43% id, 95% cov
dapA / Q65JG7: dihydrodipicolinate synthase subunit (EC 4.3.3.7) from Bacillus licheniformis	40% id, 99% cov
DAPA_STAAR / Q6GH13: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Staphylococcus aureus Q6GH13: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Staphylococcus aureus	37% id, 96% cov
DAPA_STAAC / Q5HG25: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Staphylococcus aureus Q5HG25: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Staphylococcus aureus	37% id, 96% cov
DAPA_MYCTU / P9WP25: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Mycobacterium tuberculosis	37% id, 94% cov
dapA / P19808: dihydropicolinate synthase subunit (EC 4.3.3.7) from Corynebacterium glutamicum P19808: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Corynebacterium glutamicum	36% id, 95% cov
Q7D0E8: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Agrobacterium tumefaciens	31% id, 94% cov
Q9FVC8: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Arabidopsis thaliana	35% id, 75% cov
A9CFV4: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Agrobacterium tumefaciens	27% id, 91% cov
Q7D3Z9: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Agrobacterium tumefaciens	29% id, 84% cov
A9CL94: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Agrobacterium tumefaciens	26% id, 92% cov
Q8A3Z0: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Bacteroides thetaiotaomicron	25% id, 96% cov
P24846: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Triticum aestivum	35% id, 66% cov
More...

Shew_2362: dihydrodipicolinate synthase (RefSeq) is similar to:	PaperBLAST
DAPA_METJA / Q57695: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Methanocaldococcus jannaschii	31% id, 98% cov
DAPA_AGRFC / Q8UGL3: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Agrobacterium fabrum Q8UGL3: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Agrobacterium tumefaciens	31% id, 98% cov
DAPA_NEIMB / Q9JZR4: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Neisseria meningitidis Q9JZR4: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Neisseria meningitidis	31% id, 97% cov
DAPA_PSEAE / Q9I4W3: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Pseudomonas aeruginosa Q9I4W3: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Pseudomonas aeruginosa	32% id, 91% cov
dapA / Q04796: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Bacillus subtilis	29% id, 100% cov
Q7D0E8: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Agrobacterium tumefaciens	29% id, 98% cov
DAPA_ECOLI / P0A6L2: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Escherichia coli DapA / b2478: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Escherichia coli dapA / P0A6L2: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Escherichia coli P0A6L2: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Escherichia coli	29% id, 99% cov
dapA / Q65JG7: dihydrodipicolinate synthase subunit (EC 4.3.3.7) from Bacillus licheniformis	29% id, 99% cov
A5F699: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Vibrio cholerae	29% id, 99% cov
Q6G468: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Bartonella henselae	29% id, 98% cov
Q8RBI5: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Caldanaerobacter subterraneus	29% id, 96% cov
DAPA_THEMA / Q9X1K9: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Thermotoga maritima	29% id, 92% cov
A9CFV4: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Agrobacterium tumefaciens	28% id, 96% cov
DAPA_RHIML / Q07607: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; Protein MosA; EC 4.3.3.7 from Rhizobium meliloti Q07607: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Sinorhizobium meliloti	27% id, 98% cov
DAPA_STAAR / Q6GH13: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Staphylococcus aureus Q6GH13: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Staphylococcus aureus	28% id, 96% cov
DAPA_STAAC / Q5HG25: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Staphylococcus aureus Q5HG25: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Staphylococcus aureus	27% id, 96% cov
dapA / P19808: dihydropicolinate synthase subunit (EC 4.3.3.7) from Corynebacterium glutamicum P19808: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Corynebacterium glutamicum	26% id, 93% cov
DAPA_MYCTU / P9WP25: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Mycobacterium tuberculosis	27% id, 90% cov
More...

Shew_2840: dihydrodipicolinate reductase (RefSeq) is similar to:	PaperBLAST
Q3MFY8: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Trichormus variabilis	30% id, 100% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory