Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 13 curated entries in PaperBLAST's database that match '5.1.1.4' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_2363: proline racemase (RefSeq)
is similar to:		 PaperBLAST

H3ZMH5: proline racemase (EC 5.1.1.4); 4-hydroxyproline epimerase (EC 5.1.1.8) from Thermococcus litoralis

 39% id,
98% cov

PRAC_ACESD / E3PTZ4: Proline racemase; PR; AsProR; CsPR; EC 5.1.1.4 from Acetoanaerobium sticklandii

 39% id,
99% cov

Q9L4Q3: proline racemase (EC 5.1.1.4) from Acetoanaerobium sticklandii

 38% id,
100% cov

More...

Shew_2361: proline racemase (RefSeq)
is similar to:		 PaperBLAST

M0LMI3: proline racemase (EC 5.1.1.4) from Haloarcula japonica

 40% id,
97% cov

PRAC_ACESD / E3PTZ4: Proline racemase; PR; AsProR; CsPR; EC 5.1.1.4 from Acetoanaerobium sticklandii

 38% id,
98% cov

Q9L4Q3: proline racemase (EC 5.1.1.4) from Acetoanaerobium sticklandii

 37% id,
99% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory