Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 15 curated entries in PaperBLAST's database that match '5.2.1.2'.

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_1439: maleylacetoacetate isomerase (RefSeq)
is similar to:
PaperBLAST

SO1671: Maleylacetoacetate isomerase (EC 5.2.1.2) from Shewanella oneidensis

67% id,
100% cov

Psest_3511: Maleylacetoacetate isomerase (EC 5.2.1.2) from Pseudomonas stutzeri

55% id,
98% cov

Ac3H11_2306: Maleylacetoacetate isomerase (EC 5.2.1.2) from Acidovorax sp.

50% id,
99% cov

More...

Shew_0573: stringent starvation protein A (RefSeq)
is similar to:
PaperBLAST

Psest_3511: Maleylacetoacetate isomerase (EC 5.2.1.2) from Pseudomonas stutzeri

38% id,
47% cov

SO1671: Maleylacetoacetate isomerase (EC 5.2.1.2) from Shewanella oneidensis

41% id,
42% cov

Shew_3211: glutathione S-transferase domain-containing protein (RefSeq)
is similar to:
PaperBLAST

Pf6N2E2_5292: Maleylacetoacetate isomerase (EC 5.2.1.2) from Pseudomonas fluorescens

34% id,
39% cov

AO356_16835: Maleylacetoacetate isomerase (EC 5.2.1.2) from Pseudomonas fluorescens

34% id,
39% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory