Curated BLAST for Genomes


Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 2 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_1823: putative AcnD-accessory protein PrpF (RefSeq)
is similar to:

GALD_PSEPK / Q88JY0: 4-oxalomesaconate tautomerase; Gallate degradation protein D; EC from Pseudomonas putida
gllD / Q88JY0: 4-oxalomesaconate tautomerase (EC from Pseudomonas putida

38% id,
97% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory