Searching in Shewanella loihica PV-4 (PV4)
Found 18 curated entries in PaperBLAST's database that match '5.4.2.7' as complete word(s).
These curated entries have 12 distinct sequences.
Running ublast with E ≤ 0.01
Found 3 relevant proteins in Shewanella loihica PV-4, or try another query
| Shew_2813: phosphopentomutase (RefSeq) is similar to: | PaperBLAST |
SO1219: Phosphopentomutase (EC 5.4.2.7) from Shewanella oneidensis | 86% id, 100% cov |
Tlr / b4383: phosphopentomutase (EC 5.4.2.7) from Escherichia coli | 70% id, 100% cov |
Dshi_0829: Phosphopentomutase (EC 5.4.2.7) from Dinoroseobacter shibae | 48% id, 100% cov |
| Shew_2544: phosphoglucomutase/phosphomannomutase alpha/beta/subunit (RefSeq) is similar to: | PaperBLAST |
PGM3_SCHPO / O74478: Probable phosphoribomutase; PRM; Phosphoglucomutase 3 homolog; PGM 3 homolog; EC 5.4.2.7 from Schizosaccharomyces pombe | 36% id, 99% cov |
PGM2_MOUSE / Q7TSV4: Phosphopentomutase; Glucose phosphomutase 2; Phosphodeoxyribomutase; Phosphoglucomutase-1; Phosphoglucomutase-2; PGM 2; EC 5.4.2.7; EC 5.4.2.2 from Mus musculus | 35% id, 92% cov |
PGM2_HUMAN / Q96G03: Phosphopentomutase; Glucose phosphomutase 2; Phosphodeoxyribomutase; Phosphoglucomutase-2; EC 5.4.2.7; EC 5.4.2.2 from Homo sapiens | 35% id, 93% cov |
| Shew_2832: phosphoglucosamine mutase (RefSeq) is similar to: | PaperBLAST |
PPM_THEKO / Q6I7B6: Phosphopentomutase; PPM; EC 5.4.2.7 from Thermococcus kodakarensis | 30% id, 94% cov |
PGM3_YEAST / Q03262: Phosphoribomutase; PRM; Phosphoglucomutase 3; PGM 3; EC 5.4.2.7 from Saccharomyces cerevisiae | 24% id, 65% cov |
PGM2_HUMAN / Q96G03: Phosphopentomutase; Glucose phosphomutase 2; Phosphodeoxyribomutase; Phosphoglucomutase-2; EC 5.4.2.7; EC 5.4.2.2 from Homo sapiens | 23% id, 58% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 3 reading frames. These were all redundant with annotated proteins.
Lawrence Berkeley National Laboratory