Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 193 curated entries in PaperBLAST's database that match '6.2.1.1'.

These curated entries have 146 distinct sequences.

Running ublast with E ≤ 0.01

Found 16 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_1533: acetyl-CoA synthetase (RefSeq)
is similar to:
PaperBLAST

AO356_18695: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens

72% id,
99% cov

AO353_03060: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens

71% id,
99% cov

ACSA_ECOLI / P27550: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Escherichia coli
AcsA / b4069: acetyl-CoA synthetase (AMP-forming) (EC 6.2.1.1; EC 6.2.1.17) from Escherichia coli
acs / P27550: acetyl-CoA synthetase (AMP-forming) (EC 6.2.1.17; EC 6.2.1.1) from Escherichia coli

67% id,
99% cov

More...

Shew_2568: AMP-dependent synthetase and ligase (RefSeq)
is similar to:
PaperBLAST

prpE / Q5LPB4: propionate--CoA ligase (EC 6.2.1.17) from Ruegeria pomeroyi

63% id,
100% cov

PGA1_c11900: Propionate--CoA ligase (EC 6.2.1.17) from Phaeobacter inhibens

62% id,
100% cov

ACSS3_RAT / A0A0G2K047: Acyl-CoA synthetase short-chain family member 3, mitochondrial; Acetate--CoA ligase 3; Acyl-CoA synthetase short-chain family member 3; Propionate--CoA ligase; EC 6.2.1.1; EC 6.2.1.17 from Rattus norvegicus
A0A0G2K047: propionate-CoA ligase (EC 6.2.1.17) from Rattus norvegicus

51% id,
93% cov

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Shew_2593: acyl-CoA synthetase (RefSeq)
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

56% id,
99% cov

F1CYZ6: 4-coumarate-CoA ligase (EC 6.2.1.12) from Acetobacterium woodii

32% id,
99% cov

4CL2_ORYSJ / Q42982: 4-coumarate--CoA ligase 2; 4CL 2; Os4CL2; (E)-ferulate--CoA ligase; 4-coumaroyl-CoA synthase 2; EC 6.2.1.12; EC 6.2.1.34 from Oryza sativa
Q42982: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa

30% id,
96% cov

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Shew_2039: GCN5-related N-acetyltransferase (RefSeq)
is similar to:
PaperBLAST

C4LUV9: acetate-CoA ligase (ADP-forming) (EC 6.2.1.13) from Entamoeba histolytica

36% id,
97% cov

Q9NAT4: acetate-CoA ligase (ADP-forming) (EC 6.2.1.13) from Entamoeba histolytica

36% id,
97% cov

ACDA1_PYRFU / E7FI45: Acetate--CoA ligase [ADP-forming] I subunit alpha; ADP-forming acetyl coenzyme A synthetase I subunit alpha; ACS I subunit alpha; EC 6.2.1.13 from Pyrococcus furiosus
acdA / E7FI45: acetate-CoA ligase α subunit (EC 6.2.1.13) from Pyrococcus furiosus

35% id,
98% cov

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Shew_2188: long-chain-fatty-acid--CoA ligase (RefSeq)
is similar to:
PaperBLAST

B8QN50: 4-coumarate-CoA ligase (EC 6.2.1.12) from Pinus radiata

32% id,
98% cov

P41636: 4-coumarate-CoA ligase (EC 6.2.1.12) from Pinus taeda

31% id,
98% cov

L7Z3F8: 4-coumarate-CoA ligase (EC 6.2.1.12) from Lonicera japonica

32% id,
93% cov

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Shew_1658: succinyl-CoA synthetase, alpha subunit (RefSeq)
is similar to:
PaperBLAST

ccsB / Q75VW6: citryl-CoA synthetase small subunit (EC 6.2.1.18) from Hydrogenobacter thermophilus
Q75VW6: citrate-CoA ligase (EC 6.2.1.18) from Hydrogenobacter thermophilus

35% id,
82% cov

C4LUV9: acetate-CoA ligase (ADP-forming) (EC 6.2.1.13) from Entamoeba histolytica

26% id,
31% cov

Q9NAT4: acetate-CoA ligase (ADP-forming) (EC 6.2.1.13) from Entamoeba histolytica

26% id,
31% cov

Shew_2866: acyl-CoA synthetase (RefSeq)
is similar to:
PaperBLAST

A0A1L7H9I4: 4-coumarate-CoA ligase (EC 6.2.1.12) from Peucedanum praeruptorum

29% id,
96% cov

4CL2_ORYSJ / Q42982: 4-coumarate--CoA ligase 2; 4CL 2; Os4CL2; (E)-ferulate--CoA ligase; 4-coumaroyl-CoA synthase 2; EC 6.2.1.12; EC 6.2.1.34 from Oryza sativa
Q42982: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa

30% id,
92% cov

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

29% id,
95% cov

More...

Shew_1657: succinyl-CoA synthetase subunit beta (RefSeq)
is similar to:
PaperBLAST

ccsA / Q75VW8: citryl-CoA synthetase large subunit (EC 6.2.1.18) from Hydrogenobacter thermophilus
Q75VW8: citrate-CoA ligase (EC 6.2.1.18) from Hydrogenobacter thermophilus

30% id,
93% cov

Shew_2673: putative crotonobetaine/carnitine-CoA ligase (RefSeq)
is similar to:
PaperBLAST

A0A0D4C3L0: 4-coumarate-CoA ligase (EC 6.2.1.12) from Plagiochasma appendiculatum

30% id,
93% cov

A0A1L7H9I4: 4-coumarate-CoA ligase (EC 6.2.1.12) from Peucedanum praeruptorum

28% id,
96% cov

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

29% id,
92% cov

More...

Shew_3084: AMP-dependent synthetase and ligase (RefSeq)
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

29% id,
95% cov

4CL5_ORYSJ / Q6ZAC1: 4-coumarate--CoA ligase 5; 4CL 5; Os4CL5; (E)-ferulate--CoA ligase; 4-coumaroyl-CoA synthase 5; EC 6.2.1.12; EC 6.2.1.34 from Oryza sativa
Q6ZAC1: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa

29% id,
94% cov

B7SBA2: 4-coumarate-CoA ligase (EC 6.2.1.12) from Physcomitrium patens

29% id,
90% cov

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Shew_3776: AMP-dependent synthetase and ligase (RefSeq)
is similar to:
PaperBLAST

ACSL1_HUMAN / P33121: Long-chain-fatty-acid--CoA ligase 1; Acyl-CoA synthetase 1; ACS1; Arachidonate--CoA ligase; Long-chain acyl-CoA synthetase 1; LACS 1; Long-chain acyl-CoA synthetase 2; LACS 2; Long-chain fatty acid-CoA ligase 2; Palmitoyl-CoA ligase 1; Palmitoyl-CoA ligase 2; Phytanate--CoA ligase; EC 6.2.1.3; EC 6.2.1.15; EC 6.2.1.24 from Homo sapiens
ACSL1 / P33121: long-chain-fatty-acid--CoA ligase 1 (EC 6.2.1.3; EC 6.2.1.15) from Homo sapiens

31% id,
86% cov

ACSL5_RAT / O88813: Long-chain-fatty-acid--CoA ligase 5; Arachidonate--CoA ligase; Long-chain acyl-CoA synthetase 5; LACS 5; EC 6.2.1.3; EC 6.2.1.15 from Rattus norvegicus

30% id,
87% cov

ACSL6_RAT / P33124: Long-chain-fatty-acid--CoA ligase 6; Arachidonate--CoA ligase; Long-chain acyl-CoA synthetase 6; LACS 6; Long-chain-fatty-acid--CoA ligase, brain isozyme; EC 6.2.1.3; EC 6.2.1.15 from Rattus norvegicus

28% id,
88% cov

More...

Shew_3602: O-succinylbenzoate-CoA ligase (RefSeq)
is similar to:
PaperBLAST

A0A1L7H9I4: 4-coumarate-CoA ligase (EC 6.2.1.12) from Peucedanum praeruptorum

26% id,
96% cov

4CLL1_ARATH / Q9LQ12: 4-coumarate--CoA ligase-like 1; 4-coumarate--CoA ligase isoform 10; At4CL10; EC 6.2.1.12 from Arabidopsis thaliana

24% id,
85% cov

U5MY99: 4-coumarate-CoA ligase (EC 6.2.1.12) from Pinus taeda

25% id,
81% cov

More...

Shew_3502: AMP-dependent synthetase and ligase (RefSeq)
is similar to:
PaperBLAST

ACSL5_RAT / O88813: Long-chain-fatty-acid--CoA ligase 5; Arachidonate--CoA ligase; Long-chain acyl-CoA synthetase 5; LACS 5; EC 6.2.1.3; EC 6.2.1.15 from Rattus norvegicus

28% id,
86% cov

ACSL5_HUMAN / Q9ULC5: Long-chain-fatty-acid--CoA ligase 5; Arachidonate--CoA ligase; Long-chain acyl-CoA synthetase 5; LACS 5; EC 6.2.1.3; EC 6.2.1.15 from Homo sapiens

26% id,
86% cov

ACSL6_RAT / P33124: Long-chain-fatty-acid--CoA ligase 6; Arachidonate--CoA ligase; Long-chain acyl-CoA synthetase 6; LACS 6; Long-chain-fatty-acid--CoA ligase, brain isozyme; EC 6.2.1.3; EC 6.2.1.15 from Rattus norvegicus

27% id,
83% cov

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Shew_2610: AMP-dependent synthetase and ligase (RefSeq)
is similar to:
PaperBLAST

ACBG2_MOUSE / Q2XU92: Long-chain-fatty-acid--CoA ligase ACSBG2; Acyl-CoA synthetase bubblegum family member 2; Arachidonate--CoA ligase ACSBG2; Bubblegum-related protein; EC 6.2.1.3; EC 6.2.1.15 from Mus musculus

25% id,
93% cov

ACBG2_HUMAN / Q5FVE4: Long-chain-fatty-acid--CoA ligase ACSBG2; Acyl-CoA synthetase bubblegum family member 2; Arachidonate--CoA ligase ACSBG2; Bubblegum-related protein; PRTD-NY3; EC 6.2.1.3; EC 6.2.1.15 from Homo sapiens

25% id,
92% cov

ACSL1_RAT / P18163: Long-chain-fatty-acid--CoA ligase 1; Arachidonate--CoA ligase; Long-chain acyl-CoA synthetase 1; LACS 1; Long-chain-fatty-acid--CoA ligase, liver isozyme; Phytanate--CoA ligase; EC 6.2.1.3; EC 6.2.1.15; EC 6.2.1.24 from Rattus norvegicus

27% id,
83% cov

More...

Shew_1715: peptide synthase (RefSeq)
is similar to:
PaperBLAST

4CLL1_ARATH / Q9LQ12: 4-coumarate--CoA ligase-like 1; 4-coumarate--CoA ligase isoform 10; At4CL10; EC 6.2.1.12 from Arabidopsis thaliana

24% id,
84% cov

ACSA_BACSU / P39062: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Bacillus subtilis

22% id,
90% cov

4CL2_ORYSJ / Q42982: 4-coumarate--CoA ligase 2; 4CL 2; Os4CL2; (E)-ferulate--CoA ligase; 4-coumaroyl-CoA synthase 2; EC 6.2.1.12; EC 6.2.1.34 from Oryza sativa
Q42982: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa

24% id,
77% cov

More...

Shew_3514: hypothetical protein (RefSeq)
is similar to:
PaperBLAST

4CL2 / P14913: 4-coumarate--CoA ligase 1 (EC 6.2.1.12) from Petroselinum crispum
P14913: 4-coumarate-CoA ligase (EC 6.2.1.12) from Petroselinum crispum

23% id,
63% cov

A0A1L7H9K1: 4-coumarate-CoA ligase (EC 6.2.1.12) from Peucedanum praeruptorum

23% id,
64% cov

4CL4_ARATH / Q9LU36: 4-coumarate--CoA ligase 4; 4CL 4; (E)-ferulate--CoA ligase; 4-coumarate--CoA ligase isoform 5; At4CL5; 4-coumaroyl-CoA synthase 4; Sinapate--CoA ligase; EC 6.2.1.12; EC 6.2.1.34; EC 6.2.1.- from Arabidopsis thaliana
Q9LU36: 4-coumarate-CoA ligase (EC 6.2.1.12) from Arabidopsis thaliana

24% id,
45% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 16 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1907552-1908448 (frame +2) on 113993
is similar to:
PaperBLAST

ccsB / Q75VW6: citryl-CoA synthetase small subunit (EC 6.2.1.18) from Hydrogenobacter thermophilus
Q75VW6: citrate-CoA ligase (EC 6.2.1.18) from Hydrogenobacter thermophilus
Also see hits to annotated proteins above

35% id,
84% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory