Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 8 curated entries in PaperBLAST's database that match '6.3.1.1' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_1509: asparagine synthetase B (RefSeq)
is similar to:
PaperBLAST

AsnB / b0674: asparagine synthetase B (EC 6.3.5.4; EC 6.3.1.1; EC 3.5.1.38; EC 3.5.1.2) from Escherichia coli
asnB / P22106: asparagine synthetase B (EC 6.3.5.4; EC 6.3.1.1; EC 3.5.1.38) from Escherichia coli

70% id,
100% cov

Shew_1900: asparaginyl-tRNA synthetase (RefSeq)
is similar to:
PaperBLAST

Q9V228: asparagine-tRNA ligase (EC 6.1.1.22); aspartate-ammonia ligase (EC 6.3.1.1) from Pyrococcus abyssi

27% id,
89% cov

Shew_3038: asparagine synthase (glutamine-hydrolyzing) (RefSeq)
is similar to:
PaperBLAST

AsnB / b0674: asparagine synthetase B (EC 6.3.5.4; EC 6.3.1.1; EC 3.5.1.38; EC 3.5.1.2) from Escherichia coli
asnB / P22106: asparagine synthetase B (EC 6.3.5.4; EC 6.3.1.1; EC 3.5.1.38) from Escherichia coli

41% id,
31% cov

AsnB / b0674: asparagine synthetase B (EC 6.3.5.4; EC 6.3.1.1; EC 3.5.1.38; EC 3.5.1.2) from Escherichia coli
asnB / P22106: asparagine synthetase B (EC 6.3.5.4; EC 6.3.1.1; EC 3.5.1.38) from Escherichia coli

30% id,
32% cov

AsnB / b0674: asparagine synthetase B (EC 6.3.5.4; EC 6.3.1.1; EC 3.5.1.38; EC 3.5.1.2) from Escherichia coli
asnB / P22106: asparagine synthetase B (EC 6.3.5.4; EC 6.3.1.1; EC 3.5.1.38) from Escherichia coli

31% id,
18% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory