Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 45 curated entries in PaperBLAST's database that match '6.3.5.4' as complete word(s).

These curated entries have 38 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_1509: asparagine synthetase B (RefSeq)
is similar to:
PaperBLAST

ASNB_ECOLI / P22106: Asparagine synthetase B [glutamine-hydrolyzing]; AS-B; EC 6.3.5.4 from Escherichia coli
AsnB / b0674: asparagine synthetase B (EC 6.3.5.4; EC 6.3.1.1; EC 3.5.1.38; EC 3.5.1.2) from Escherichia coli
asnB: asparagine synthetase B, glutamine-hydrolyzing; EC 6.3.5.4 from Escherichia coli
asnB / P22106: asparagine synthetase B (EC 6.3.5.4; EC 6.3.1.1; EC 3.5.1.38) from Escherichia coli
P22106: asparagine synthase (glutamine-hydrolysing) (EC 6.3.5.4) from Escherichia coli

70% id,
100% cov

Q9SP19: asparagine synthase (glutamine-hydrolysing) (EC 6.3.5.4) from Helianthus annuus

56% id,
99% cov

B3KYI2: asparagine synthase (glutamine-hydrolysing) (EC 6.3.5.4) from Phaseolus vulgaris

56% id,
97% cov

More...

Shew_3038: asparagine synthase (glutamine-hydrolyzing) (RefSeq)
is similar to:
PaperBLAST

asnO / GI|1934835: asparagine synthase (glutamine-hydrolysing) 3; EC 6.3.5.4 from Bacillus subtilis

32% id,
87% cov

asnB / GB|CAB15032.1: asparagine synthase (glutamine-hydrolysing) 1; EC 6.3.5.4 from Bacillus subtilis

35% id,
59% cov

ASNH_MYCBO / P64248: Putative asparagine synthetase [glutamine-hydrolyzing]; EC 6.3.5.4 from Mycobacterium bovis

33% id,
61% cov

More...

Shew_2079: aspartyl-tRNA synthetase (RefSeq)
is similar to:
PaperBLAST

E9BLE1: asparagine synthase (glutamine-hydrolysing) (EC 6.3.5.4) from Leishmania donovani

29% id,
53% cov

Shew_1900: asparaginyl-tRNA synthetase (RefSeq)
is similar to:
PaperBLAST

E9BLE1: asparagine synthase (glutamine-hydrolysing) (EC 6.3.5.4) from Leishmania donovani

24% id,
48% cov

E9BLE1: asparagine synthase (glutamine-hydrolysing) (EC 6.3.5.4) from Leishmania donovani

28% id,
29% cov

Shew_3839: glucosamine--fructose-6-phosphate aminotransferase, isomerizing (RefSeq)
is similar to:
PaperBLAST

Q9SP20: asparagine synthase (glutamine-hydrolysing) (EC 6.3.5.4) from Helianthus annuus

29% id,
27% cov

asnB / GB|CAB15032.1: asparagine synthase (glutamine-hydrolysing) 1; EC 6.3.5.4 from Bacillus subtilis

46% id,
6% cov

Shew_0812: lysyl-tRNA synthetase (RefSeq)
is similar to:
PaperBLAST

E9BLE1: asparagine synthase (glutamine-hydrolysing) (EC 6.3.5.4) from Leishmania donovani

25% id,
22% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory