Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 7 curated entries in PaperBLAST's database that match '3-isopropylmalate dehydratase large subunit' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_3470: isopropylmalate isomerase large subunit (RefSeq)
is similar to:
PaperBLAST

leuC / ECOCYC|LEUC-MONOMER: 3-isopropylmalate dehydratase large subunit; EC 4.2.1.33 from Escherichia coli

72% id,
100% cov

LEUC1_SALTY / P15717: 3-isopropylmalate dehydratase large subunit 1; Alpha-IPM isomerase 1; IPMI 1; Isopropylmalate isomerase 1; EC 4.2.1.33 from Salmonella typhimurium

71% id,
100% cov

leuC / CAD19516.1: 3-isopropylmalate dehydratase large subunit, partial from Rhizobium etli

60% id,
100% cov

More...

Shew_1822: aconitate hydratase (RefSeq)
is similar to:
PaperBLAST

LEUC_ARATH / Q94AR8: 3-isopropylmalate dehydratase large subunit, chloroplastic; 2-(omega-methylthio)alkylmalate dehydratase large subunit; AtLEUC; Isopropylmalate isomerase large subunit 1; AtIIL1; IPMI LSU1; Methylthioalkylmalate isomerase large subunit; MAM-IL; EC 4.2.1.33; EC 4.2.1.170 from Arabidopsis thaliana

24% id,
80% cov

LEUC_MYCBO / Q7TXH6: 3-isopropylmalate dehydratase large subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 from Mycobacterium bovis

25% id,
75% cov

Shew_3424: bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase (RefSeq)
is similar to:
PaperBLAST

LEUC_ARATH / Q94AR8: 3-isopropylmalate dehydratase large subunit, chloroplastic; 2-(omega-methylthio)alkylmalate dehydratase large subunit; AtLEUC; Isopropylmalate isomerase large subunit 1; AtIIL1; IPMI LSU1; Methylthioalkylmalate isomerase large subunit; MAM-IL; EC 4.2.1.33; EC 4.2.1.170 from Arabidopsis thaliana

28% id,
49% cov

LEUC_CORGL / P58946: 3-isopropylmalate dehydratase large subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 from Corynebacterium glutamicum

25% id,
43% cov

Shew_3469: isopropylmalate isomerase small subunit (RefSeq)
is similar to:
PaperBLAST

GLOJ_GLAL2 / S3E7P8: 3-isopropylmalate dehydratase large subunit gloJ; L-homotyrosine biosynthesis sub-cluster protein gloJ; Pneumocandin biosynthesis cluster protein J; EC 4.2.1.33 from Glarea lozoyensis

32% id,
14% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory