Curated BLAST for Genomes


Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 3 curated entries in PaperBLAST's database that match 'Glutamate--LysW ligase' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_3037: alpha-L-glutamate ligase (RefSeq)
is similar to:

ARGX_SULAC / Q4J8E7: Glutamate--LysW ligase ArgX; EC 6.3.2.- from Sulfolobus acidocaldarius
argX / Q4J8E7: glutamate--LysW ligase monomer (EC from Sulfolobus acidocaldarius

24% id,
98% cov

ARGX_SULTO / Q970U6: Glutamate--LysW ligase ArgX; EC 6.3.2.- from Sulfurisphaera tokodaii

23% id,
98% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory