Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 1 curated entries in PaperBLAST's database that match 'LysW%lysine%hydrolase' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_0201: acetylornithine deacetylase (RefSeq)
is similar to:
PaperBLAST

LYSK_THET2 / Q8VUS5: [LysW]-lysine hydrolase; EC 3.5.1.130 from Thermus thermophilus

25% id,
94% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory