Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 7 curated entries in PaperBLAST's database that match 'anthranilate synthase component I' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_2251: anthranilate synthase component I (RefSeq)
is similar to:
PaperBLAST

trpE / AAD09116.1: anthranilate synthase component I from Rhodobacter sphaeroides

39% id,
87% cov

7bvdA / A0QX93: Anthranilate synthase component i (trpe)[mycolicibacterium smegmatis]

40% id,
79% cov

5cwaA / P9WFX2: Structure of anthranilate synthase component i (trpe) from mycobacterium tuberculosis with inhibitor bound

41% id,
73% cov

More...

Shew_1903: para-aminobenzoate synthase, subunit I (RefSeq)
is similar to:
PaperBLAST

7bvdA / A0QX93: Anthranilate synthase component i (trpe)[mycolicibacterium smegmatis]

33% id,
90% cov

5cwaA / P9WFX2: Structure of anthranilate synthase component i (trpe) from mycobacterium tuberculosis with inhibitor bound

32% id,
90% cov

TRPE_YEAST / P00899: Anthranilate synthase component 1; Anthranilate synthase component I; EC 4.1.3.27 from Saccharomyces cerevisiae

32% id,
84% cov

More...

Shew_3677: isochorismate synthase (RefSeq)
is similar to:
PaperBLAST

TRPE_YEAST / P00899: Anthranilate synthase component 1; Anthranilate synthase component I; EC 4.1.3.27 from Saccharomyces cerevisiae

27% id,
64% cov

trpE / BAC65122.2: anthranilate synthase component I from Burkholderia multivorans

30% id,
51% cov

trpE: anthranilate synthase component I; EC 4.1.3.27 from Leptospira biflexa

32% id,
44% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory