Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 3 curated entries in PaperBLAST's database that match 'anthranilate synthase component II' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_0575: glutamine amidotransferase of anthranilate synthase (RefSeq)
is similar to:
PaperBLAST

trpG / BAC65123.1: anthranilate synthase component II from Burkholderia multivorans

56% id,
96% cov

trpG / AAD09117.1: anthranilate synthase component II from Rhodobacter sphaeroides

50% id,
97% cov

trpG: anthranilate synthase component II; EC 4.1.3.27 from Leptospira biflexa

42% id,
99% cov

Shew_2252: anthranilate synthase component II (RefSeq)
is similar to:
PaperBLAST

trpG / AAD09117.1: anthranilate synthase component II from Rhodobacter sphaeroides

48% id,
95% cov

trpG / BAC65123.1: anthranilate synthase component II from Burkholderia multivorans

47% id,
94% cov

trpG: anthranilate synthase component II; EC 4.1.3.27 from Leptospira biflexa

38% id,
97% cov

Shew_2839: carbamoyl phosphate synthase small subunit (RefSeq)
is similar to:
PaperBLAST

trpG / AAD09117.1: anthranilate synthase component II from Rhodobacter sphaeroides

31% id,
84% cov

trpG / BAC65123.1: anthranilate synthase component II from Burkholderia multivorans

26% id,
93% cov

Shew_1298: bifunctional GMP synthase/glutamine amidotransferase protein (RefSeq)
is similar to:
PaperBLAST

trpG: anthranilate synthase component II; EC 4.1.3.27 from Leptospira biflexa

30% id,
52% cov

trpG / AAD09117.1: anthranilate synthase component II from Rhodobacter sphaeroides

26% id,
54% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory