Searching in Shewanella loihica PV-4 (PV4)
Found 1 curated entries in PaperBLAST's database that match 'cystathionine-gamma-lyase' as complete word(s).
These curated entries have 1 distinct sequences.
Running ublast with E ≤ 0.01
Found 4 relevant proteins in Shewanella loihica PV-4, or try another query
| Shew_0520: O-succinylhomoserine (thiol)-lyase (RefSeq) is similar to: | PaperBLAST |
CH_124009: cystathionine-gamma-lyase [Acremonium chrysogenum] from Magnaporthe grisea | 45% id, 92% cov |
| Shew_2491: methionine gamma-lyase (RefSeq) is similar to: | PaperBLAST |
CH_124009: cystathionine-gamma-lyase [Acremonium chrysogenum] from Magnaporthe grisea | 36% id, 90% cov |
| Shew_1789: cystathionine beta-lyase (RefSeq) is similar to: | PaperBLAST |
CH_124009: cystathionine-gamma-lyase [Acremonium chrysogenum] from Magnaporthe grisea | 31% id, 87% cov |
| Shew_2710: O-acetylhomoserine/O-acetylserine sulfhydrylase (RefSeq) is similar to: | PaperBLAST |
CH_124009: cystathionine-gamma-lyase [Acremonium chrysogenum] from Magnaporthe grisea | 33% id, 47% cov |
CH_124009: cystathionine-gamma-lyase [Acremonium chrysogenum] from Magnaporthe grisea | 35% id, 42% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 589104-590336 (frame +3) on 113993 is similar to: | PaperBLAST |
CH_124009: cystathionine-gamma-lyase [Acremonium chrysogenum] from Magnaporthe grisea | 44% id, 97% cov |
Lawrence Berkeley National Laboratory