Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella loihica PV-4 (PV4)

Found 9 curated entries in PaperBLAST's database that match 'hisF' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella loihica PV-4, or try another query

Shew_2203: imidazole glycerol phosphate synthase subunit HisF (RefSeq)
is similar to:
PaperBLAST

HIS6_ECOLI / P60664: Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 from Escherichia coli
HisF / b2025: imidazole glycerol phosphate synthase subunit HisF (EC 4.3.2.10) from Escherichia coli
hisF / P60664: imidazole glycerol phosphate synthase subunit HisF (EC 4.3.2.10) from Escherichia coli

75% id,
100% cov

2a0nA / Q9X0C6: Crystal structure of imidazole glycerol phosphate synthase subunit hisf (ec 4.1.3.-) (Tm1036) from thermotoga maritima at 1.64 a resolution

49% id,
100% cov

HIS6_THEMA / Q9X0C6: Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 from Thermotoga maritima

49% id,
99% cov

More...

Shew_2202: 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (RefSeq)
is similar to:
PaperBLAST

1h5yA / Q8ZY16: Hisf protein from pyrobaculum aerophilum

28% id,
87% cov

1h5yB / Q8ZY16: Hisf protein from pyrobaculum aerophilum

28% id,
87% cov

2a0nA / Q9X0C6: Crystal structure of imidazole glycerol phosphate synthase subunit hisf (ec 4.1.3.-) (Tm1036) from thermotoga maritima at 1.64 a resolution

26% id,
92% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory