Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 19 curated entries in PaperBLAST's database that match '1.1.1.103' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS15335: NAD-dependent epimerase
is similar to:
PaperBLAST

E5RQ20: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Cupriavidus necator

53% id,
97% cov

RR42_RS28300: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Cupriavidus basilensis

54% id,
94% cov

E3PS87: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Acetoanaerobium sticklandii

49% id,
98% cov

More...

CA265_RS12005: glutathione-dependent formaldehyde dehydrogenase
is similar to:
PaperBLAST

TDH_PYRHO / O58389: L-threonine 3-dehydrogenase; L-ThrDH; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Pyrococcus horikoshii
O58389: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Pyrococcus horikoshii

31% id,
94% cov

TDH_THEKO / Q5JI69: L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Thermococcus kodakarensis
Q5JI69: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Thermococcus kodakarensis

29% id,
93% cov

TDH_THET8 / Q5SKS4: L-threonine 3-dehydrogenase; TDH; EC 1.1.1.103 from Thermus thermophilus

28% id,
94% cov

More...

CA265_RS24860: alcohol dehydrogenase
is similar to:
PaperBLAST

YiaY / b3589: L-threonine dehydrogenase (EC 1.1.1.103) from Escherichia coli
yiaY / P37686: L-threonine dehydrogenase (EC 1.1.1.103) from Escherichia coli

30% id,
99% cov

CA265_RS08610: alcohol dehydrogenase
is similar to:
PaperBLAST

TDH_PYRHO / O58389: L-threonine 3-dehydrogenase; L-ThrDH; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Pyrococcus horikoshii
O58389: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Pyrococcus horikoshii

29% id,
99% cov

TDH_PYRFU / Q8U259: L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Pyrococcus furiosus

29% id,
95% cov

TDH_THEKO / Q5JI69: L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Thermococcus kodakarensis
Q5JI69: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Thermococcus kodakarensis

28% id,
97% cov

More...

CA265_RS07350: alcohol dehydrogenase
is similar to:
PaperBLAST

TDH_THEKO / Q5JI69: L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Thermococcus kodakarensis
Q5JI69: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Thermococcus kodakarensis

27% id,
93% cov

TDH_PYRFU / Q8U259: L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Pyrococcus furiosus

27% id,
94% cov

TDH_PYRHO / O58389: L-threonine 3-dehydrogenase; L-ThrDH; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Pyrococcus horikoshii
O58389: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Pyrococcus horikoshii

26% id,
95% cov

CA265_RS12755: hydroxyacid dehydrogenase
is similar to:
PaperBLAST

TDH_ECOLI / P07913: L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Escherichia coli
Tdh / b3616: threonine dehydrogenase (EC 1.1.1.103) from Escherichia coli
tdh / P07913: threonine dehydrogenase (EC 1.1.1.103) from Escherichia coli
P07913: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Escherichia coli

27% id,
91% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory