Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 5 curated entries in PaperBLAST's database that match '1.1.1.175' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 12 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS08355: short-chain dehydrogenase
is similar to:
PaperBLAST

XDH_CAUVN / B8H1Z0: D-xylose 1-dehydrogenase; XDH; EC 1.1.1.175 from Caulobacter vibrioides
CCNA_00864: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter crescentus
B8H1Z0: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter vibrioides

36% id,
97% cov

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis

34% id,
94% cov

CA265_RS00310: oxidoreductase
is similar to:
PaperBLAST

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis

35% id,
94% cov

XDH_CAUVN / B8H1Z0: D-xylose 1-dehydrogenase; XDH; EC 1.1.1.175 from Caulobacter vibrioides
CCNA_00864: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter crescentus
B8H1Z0: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter vibrioides

32% id,
96% cov

CA265_RS15450: 3-oxoacyl-[acyl-carrier-protein] reductase
is similar to:
PaperBLAST

XDH_CAUVN / B8H1Z0: D-xylose 1-dehydrogenase; XDH; EC 1.1.1.175 from Caulobacter vibrioides
CCNA_00864: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter crescentus
B8H1Z0: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter vibrioides

34% id,
96% cov

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis

34% id,
93% cov

CA265_RS09980: NAD(P)-dependent oxidoreductase
is similar to:
PaperBLAST

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis

32% id,
94% cov

XDH_CAUVN / B8H1Z0: D-xylose 1-dehydrogenase; XDH; EC 1.1.1.175 from Caulobacter vibrioides
CCNA_00864: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter crescentus
B8H1Z0: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter vibrioides

29% id,
96% cov

CA265_RS13715: glucose dehydrogenase
is similar to:
PaperBLAST

XDH_CAUVN / B8H1Z0: D-xylose 1-dehydrogenase; XDH; EC 1.1.1.175 from Caulobacter vibrioides
CCNA_00864: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter crescentus
B8H1Z0: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter vibrioides

31% id,
96% cov

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis

30% id,
93% cov

CA265_RS08650: short-chain dehydrogenase
is similar to:
PaperBLAST

XDH_CAUVN / B8H1Z0: D-xylose 1-dehydrogenase; XDH; EC 1.1.1.175 from Caulobacter vibrioides
CCNA_00864: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter crescentus
B8H1Z0: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter vibrioides

28% id,
96% cov

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis

29% id,
94% cov

CA265_RS04665: short-chain dehydrogenase
is similar to:
PaperBLAST

XDH_CAUVN / B8H1Z0: D-xylose 1-dehydrogenase; XDH; EC 1.1.1.175 from Caulobacter vibrioides
CCNA_00864: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter crescentus
B8H1Z0: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter vibrioides

27% id,
97% cov

CA265_RS22580: short-chain dehydrogenase
is similar to:
PaperBLAST

XDH_CAUVN / B8H1Z0: D-xylose 1-dehydrogenase; XDH; EC 1.1.1.175 from Caulobacter vibrioides
CCNA_00864: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter crescentus
B8H1Z0: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter vibrioides

27% id,
97% cov

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis

23% id,
94% cov

CA265_RS23255: short-chain dehydrogenase/reductase
is similar to:
PaperBLAST

XDH_CAUVN / B8H1Z0: D-xylose 1-dehydrogenase; XDH; EC 1.1.1.175 from Caulobacter vibrioides
CCNA_00864: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter crescentus
B8H1Z0: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter vibrioides

29% id,
89% cov

CA265_RS24505: short-chain dehydrogenase/reductase
is similar to:
PaperBLAST

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis

28% id,
86% cov

CA265_RS09915: short-chain dehydrogenase/reductase
is similar to:
PaperBLAST

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis

30% id,
72% cov

CA265_RS04990: short chain dehydrogenase
is similar to:
PaperBLAST

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis

25% id,
86% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 12 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3434267-3435085 (frame -2) on NZ_CP021237
is similar to:
PaperBLAST

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis
Also see hits to annotated proteins above

30% id,
99% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory