Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 13 curated entries in PaperBLAST's database that match '1.1.1.179' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 11 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS12040: hypothetical protein
is similar to:
PaperBLAST

Q5UY95: D-xylose 1-dehydrogenase (NADP+) (EC 1.1.1.179) from Haloarcula marismortui

28% id,
93% cov

XDH2_HALVD / D4GP30: D-xylose 1-dehydrogenase (NADP(+)) 2; XDH 2; EC 1.1.1.179 from Haloferax volcanii
D4GP30: D-xylose 1-dehydrogenase (NADP+) (EC 1.1.1.179) from Haloferax volcanii

25% id,
99% cov

DHDH_RABIT / Q9TV70: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; D-xylose 1-dehydrogenase; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase; Ory2DD; EC 1.3.1.20; EC 1.1.1.179 from Oryctolagus cuniculus

24% id,
97% cov

More...

CA265_RS12480: oxidoreductase
is similar to:
PaperBLAST

DHDH_CANLF / Q9TV68: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; Can2DD; D-xylose 1-dehydrogenase; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase; EC 1.3.1.20; EC 1.1.1.179 from Canis lupus

30% id,
81% cov

DHDH_MACFA / Q9TQS6: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; Cmo2DD; D-xylose 1-dehydrogenase; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase; EC 1.3.1.20; EC 1.1.1.179 from Macaca fascicularis
DHDH_MACFU / Q7JK39: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; D-xylose 1-dehydrogenase; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase; Jmo2DD; EC 1.3.1.20; EC 1.1.1.179 from Macaca fuscata
Q9TQS6: D-xylose 1-dehydrogenase (NADP+) (EC 1.1.1.179); trans-1,2-dihydrobenzene-1,2-diol dehydrogenase (EC 1.3.1.20) from Macaca fascicularis

29% id,
81% cov

DHDH_HUMAN / Q9UQ10: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; D-xylose 1-dehydrogenase; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase; Hum2DD; EC 1.3.1.20; EC 1.1.1.179 from Homo sapiens

28% id,
81% cov

More...

CA265_RS22425: oxidoreductase
is similar to:
PaperBLAST

XDH2_HALVD / D4GP30: D-xylose 1-dehydrogenase (NADP(+)) 2; XDH 2; EC 1.1.1.179 from Haloferax volcanii
D4GP30: D-xylose 1-dehydrogenase (NADP+) (EC 1.1.1.179) from Haloferax volcanii

25% id,
95% cov

XDH_HYPJR / A0A024SMV2: D-xylose 1-dehydrogenase (NADP(+)); XDH; D-xylose-NADP dehydrogenase; NADP(+)-dependent D-xylose dehydrogenase; EC 1.1.1.179 from Hypocrea jecorina

27% id,
52% cov

Q5UY95: D-xylose 1-dehydrogenase (NADP+) (EC 1.1.1.179) from Haloarcula marismortui

21% id,
52% cov

CA265_RS15350: oxidoreductase
is similar to:
PaperBLAST

DHDH_RABIT / Q9TV70: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; D-xylose 1-dehydrogenase; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase; Ory2DD; EC 1.3.1.20; EC 1.1.1.179 from Oryctolagus cuniculus

25% id,
86% cov

CA265_RS08510: oxidoreductase
is similar to:
PaperBLAST

Q5UY95: D-xylose 1-dehydrogenase (NADP+) (EC 1.1.1.179) from Haloarcula marismortui

23% id,
80% cov

DHDH_PIG / Q9TV69: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; D-xylose 1-dehydrogenase; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase; Sus2DD; EC 1.3.1.20; EC 1.1.1.179 from Sus scrofa

22% id,
73% cov

DHDH_RABIT / Q9TV70: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; D-xylose 1-dehydrogenase; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase; Ory2DD; EC 1.3.1.20; EC 1.1.1.179 from Oryctolagus cuniculus

21% id,
70% cov

More...

CA265_RS14270: hyaluronate lyase
is similar to:
PaperBLAST

XDH_HYPJR / A0A024SMV2: D-xylose 1-dehydrogenase (NADP(+)); XDH; D-xylose-NADP dehydrogenase; NADP(+)-dependent D-xylose dehydrogenase; EC 1.1.1.179 from Hypocrea jecorina

25% id,
73% cov

XDH_PAENI / Q8GAK6: D-xylose dehydrogenase; NADP-dependent D-xylose dehydrogenase; EC 1.1.1.179 from Paenarthrobacter nicotinovorans

25% id,
62% cov

CA265_RS08565: oxidoreductase
is similar to:
PaperBLAST

DHDH_CANLF / Q9TV68: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; Can2DD; D-xylose 1-dehydrogenase; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase; EC 1.3.1.20; EC 1.1.1.179 from Canis lupus

24% id,
73% cov

DHDH_HUMAN / Q9UQ10: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; D-xylose 1-dehydrogenase; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase; Hum2DD; EC 1.3.1.20; EC 1.1.1.179 from Homo sapiens

24% id,
65% cov

DHDH_MACFA / Q9TQS6: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; Cmo2DD; D-xylose 1-dehydrogenase; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase; EC 1.3.1.20; EC 1.1.1.179 from Macaca fascicularis
DHDH_MACFU / Q7JK39: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; D-xylose 1-dehydrogenase; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase; Jmo2DD; EC 1.3.1.20; EC 1.1.1.179 from Macaca fuscata
Q9TQS6: D-xylose 1-dehydrogenase (NADP+) (EC 1.1.1.179); trans-1,2-dihydrobenzene-1,2-diol dehydrogenase (EC 1.3.1.20) from Macaca fascicularis

24% id,
65% cov

More...

CA265_RS23300: oxidoreductase
is similar to:
PaperBLAST

XDH_PAENI / Q8GAK6: D-xylose dehydrogenase; NADP-dependent D-xylose dehydrogenase; EC 1.1.1.179 from Paenarthrobacter nicotinovorans

20% id,
74% cov

CA265_RS23285: oxidoreductase
is similar to:
PaperBLAST

XDH_HYPJR / A0A024SMV2: D-xylose 1-dehydrogenase (NADP(+)); XDH; D-xylose-NADP dehydrogenase; NADP(+)-dependent D-xylose dehydrogenase; EC 1.1.1.179 from Hypocrea jecorina

28% id,
37% cov

XDH_SCHPO / Q9UT60: Probable D-xylose 1-dehydrogenase (NADP(+)); XDH; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase homolog; NADP(+)-dependent D-xylose dehydrogenase; EC 1.1.1.179 from Schizosaccharomyces pombe

30% id,
28% cov

XDH2_HALVD / D4GP30: D-xylose 1-dehydrogenase (NADP(+)) 2; XDH 2; EC 1.1.1.179 from Haloferax volcanii
D4GP30: D-xylose 1-dehydrogenase (NADP+) (EC 1.1.1.179) from Haloferax volcanii

27% id,
30% cov

CA265_RS23295: oxidoreductase
is similar to:
PaperBLAST

XDH_HYPJR / A0A024SMV2: D-xylose 1-dehydrogenase (NADP(+)); XDH; D-xylose-NADP dehydrogenase; NADP(+)-dependent D-xylose dehydrogenase; EC 1.1.1.179 from Hypocrea jecorina

31% id,
31% cov

CA265_RS15365: oxidoreductase
is similar to:
PaperBLAST

XDH_HYPJR / A0A024SMV2: D-xylose 1-dehydrogenase (NADP(+)); XDH; D-xylose-NADP dehydrogenase; NADP(+)-dependent D-xylose dehydrogenase; EC 1.1.1.179 from Hypocrea jecorina

29% id,
26% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory