Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 76 curated entries in PaperBLAST's database that match '1.1.1.27' as complete word(s).

These curated entries have 63 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS07800: Fe-S oxidoreductase is similar to:	PaperBLAST
lutA / O07020: iron-sulfur oxidase subunit used in L-lactate utilization (EC 1.1.1.27) from Bacillus subtilis	40% id, 99% cov
Q5F885: L-lactate dehydrogenase (subunit 3/3) (EC 1.1.1.27) from Neisseria gonorrhoeae	36% id, 92% cov

CA265_RS18400: iron-sulfur cluster-binding protein is similar to:	PaperBLAST
Q5F883: L-lactate dehydrogenase (subunit 1/3) (EC 1.1.1.27) from Neisseria gonorrhoeae	40% id, 97% cov
lutB / O07021: component of an iron-sulfur oxidase linked to L-lactate utilization (EC 1.1.1.27) from Bacillus subtilis	41% id, 95% cov

CA265_RS03080: malate dehydrogenase is similar to:	PaperBLAST
CH_024078: L-lactate dehydrogenase; EC 1.1.1.27 from Babesia bovis Q7Z0X7: L-lactate dehydrogenase (EC 1.1.1.27) from Babesia bovis	39% id, 95% cov
Q27797: L-lactate dehydrogenase (EC 1.1.1.27) from Toxoplasma gondii	38% id, 97% cov
W8CXQ9: L-lactate dehydrogenase (EC 1.1.1.27) from Weizmannia coagulans	37% id, 98% cov
Q8I8U5: L-lactate dehydrogenase (EC 1.1.1.27) from Eimeria acervulina	38% id, 96% cov
Q9GT92: L-lactate dehydrogenase (EC 1.1.1.27) from Cryptosporidium parvum	37% id, 96% cov
Q8I8U4: L-lactate dehydrogenase (EC 1.1.1.27) from Eimeria tenella	37% id, 95% cov
P90613: L-lactate dehydrogenase (EC 1.1.1.27) from Toxoplasma gondii	36% id, 97% cov
LDH_THEMA / P16115: L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Thermotoga maritima	36% id, 97% cov
B1A4R6: L-lactate dehydrogenase (EC 1.1.1.27) from Thermoanaerobacter ethanolicus	35% id, 99% cov
LDH: lactate dehydrogenase; EC 1.1.1.27 from Plasmodium falciparum LDH / GB\|ABA46354.1: lactate dehydrogenase; EC 1.1.1.27 from Plasmodium falciparum	34% id, 98% cov
LDH_GEOSE / P00344: L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Geobacillus stearothermophilus	35% id, 97% cov
Ldha / P04642: lactate dehydrogenase subunit (EC 1.1.1.27) from Rattus norvegicus	36% id, 93% cov
E7CXT1: L-lactate dehydrogenase (EC 1.1.1.27) from Thermoanaerobacterium saccharolyticum	34% id, 97% cov
LDH_DEIRA / P50933: L-lactate dehydrogenase; L-LDH; 2-ketoacid:NAD-dependent dehydrogenase; EC 1.1.1.27 from Deinococcus radiodurans	33% id, 100% cov
B9MKZ8: L-lactate dehydrogenase (EC 1.1.1.27) from Caldicellulosiruptor bescii	33% id, 98% cov
Q8I8U3: L-lactate dehydrogenase (EC 1.1.1.27) from Eimeria maxima	34% id, 96% cov
LDHA_PIG / P00339: L-lactate dehydrogenase A chain; LDH-A; LDH muscle subunit; LDH-M; EC 1.1.1.27 from Sus scrofa P00339: L-lactate dehydrogenase (EC 1.1.1.27) from Sus scrofa	35% id, 93% cov
B7XH73: L-lactate dehydrogenase (EC 1.1.1.27) from Equus caballus	35% id, 93% cov
LDHA_MOUSE / P06151: L-lactate dehydrogenase A chain; LDH-A; LDH muscle subunit; LDH-M; EC 1.1.1.27 from Mus musculus	35% id, 93% cov
LDHA_SQUAC / P00341: L-lactate dehydrogenase A chain; LDH-A; LDH-M; EC 1.1.1.27 from Squalus acanthias	35% id, 93% cov
LDH_BACSU / P13714: L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Bacillus subtilis	33% id, 98% cov
LDH1_STAAC / Q5HJD7: L-lactate dehydrogenase 1; L-LDH 1; EC 1.1.1.27 from Staphylococcus aureus LDH1_STAAE / A6QDL6: L-lactate dehydrogenase 1; L-LDH 1; EC 1.1.1.27 from Staphylococcus aureus	33% id, 98% cov
LDH_PLABA / Q7SI97: L-lactate dehydrogenase; EC 1.1.1.27 from Plasmodium berghei	33% id, 98% cov
LDH_LACPE / P56511: L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Lactiplantibacillus pentosus ldh: L-lactate dehydrogenase; EC 1.1.1.27 from Lactobacillus pentosus	33% id, 97% cov
ldh1: L-lactate dehydrogenase 1; EC 1.1.1.27 from Lactobacillus plantarum	33% id, 97% cov
LDH2_BIFL2 / E8ME30: L-lactate dehydrogenase 2; L-LDH 2; FBP-dependent LDH; EC 1.1.1.27 from Bifidobacterium longum ldh2 / E8ME30: L-lactate dehydrogenase subunit (EC 1.1.1.27) from Bifidobacterium longum	34% id, 95% cov
LDHA_RABIT / P13491: L-lactate dehydrogenase A chain; LDH-A; LDH muscle subunit; LDH-M; EC 1.1.1.27 from Oryctolagus cuniculus P13491: L-lactate dehydrogenase (EC 1.1.1.27) from Oryctolagus cuniculus	34% id, 93% cov
Q5FMB0: L-lactate dehydrogenase (EC 1.1.1.27) from Lactobacillus acidophilus	34% id, 93% cov
LDHA_HUMAN / P00338: L-lactate dehydrogenase A chain; LDH-A; Cell proliferation-inducing gene 19 protein; LDH muscle subunit; LDH-M; Renal carcinoma antigen NY-REN-59; EC 1.1.1.27 from Homo sapiens P00338: L-lactate dehydrogenase (EC 1.1.1.27) from Homo sapiens	34% id, 93% cov
LDH6A_HUMAN / Q6ZMR3: L-lactate dehydrogenase A-like 6A; LDHA-like protein 6A; EC 1.1.1.27 from Homo sapiens	34% id, 94% cov
LDH_THEAQ / P13715: L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Thermus aquaticus	31% id, 100% cov
LDH_LACHE / O32765: L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Lactobacillus helveticus	34% id, 93% cov
P59390: L-lactate dehydrogenase (EC 1.1.1.27) from Lactiplantibacillus plantarum	32% id, 98% cov
P07864: L-lactate dehydrogenase (EC 1.1.1.27) from Homo sapiens	33% id, 93% cov
LDH_SELRU / Q9EVR0: L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Selenomonas ruminantium	32% id, 96% cov
ldh / P78007: L-lactate dehydrogenase (EC 1.1.1.27) from Mycoplasma pneumoniae	31% id, 99% cov
LDHB_HUMAN / P07195: L-lactate dehydrogenase B chain; LDH-B; LDH heart subunit; LDH-H; Renal carcinoma antigen NY-REN-46; EC 1.1.1.27 from Homo sapiens	33% id, 93% cov
LDH_LACLN / D8KFT1: L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Lactococcus lactis	31% id, 98% cov
LDH_THET8 / Q5SJA1: L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Thermus thermophilus	31% id, 98% cov
A0A1A6GB48: L-lactate dehydrogenase (EC 1.1.1.27) from Enterococcus mundtii	32% id, 94% cov
LDHC_MOUSE / P00342: L-lactate dehydrogenase C chain; LDH-C; LDH testis subunit; LDH-X; EC 1.1.1.27 from Mus musculus	33% id, 93% cov
LDH_THECA / P06150: L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Thermus caldophilus	31% id, 98% cov
Q5E9B1: L-lactate dehydrogenase (EC 1.1.1.27) from Bos taurus	32% id, 93% cov
LDH_PEDAC / Q59645: L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Pediococcus acidilactici	32% id, 94% cov
LDH_LACCA / P00343: L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Lacticaseibacillus casei ldh / P00343: L-lactate dehydrogenase subunit (EC 1.1.1.27) from Lactobacillus casei	32% id, 93% cov
A0A2U9AUU1: L-lactate dehydrogenase (EC 1.1.1.27) from Lacticaseibacillus casei	32% id, 93% cov
Q0GND9: L-lactate dehydrogenase (EC 1.1.1.27) from Amblyrhynchus cristatus	32% id, 93% cov
Q0GND8: L-lactate dehydrogenase (EC 1.1.1.27) from Iguana iguana	32% id, 93% cov
LDHB_PIG / P00336: L-lactate dehydrogenase B chain; LDH-B; LDH heart subunit; LDH-H; EC 1.1.1.27 from Sus scrofa P00336: L-lactate dehydrogenase (EC 1.1.1.27) from Sus scrofa	32% id, 93% cov
LDH_STRP2 / Q04K99: L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Streptococcus pneumoniae LDH_STRPN / P0A3M9: L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Streptococcus pneumoniae	31% id, 94% cov
Q8CMZ0: L-lactate dehydrogenase (EC 1.1.1.27) from Staphylococcus epidermidis	30% id, 95% cov
ldh / P26283: L-lactate dehydrogenase subunit (EC 1.1.1.27) from Streptococcus mutans P26283: L-lactate dehydrogenase (EC 1.1.1.27) from Streptococcus mutans	30% id, 94% cov
ldhA: L-lactate dehydrogenase 1; EC 1.1.1.27 from Lactococcus lactis	30% id, 92% cov
LDH2_STAAC / Q5HCV0: L-lactate dehydrogenase 2; L-LDH 2; EC 1.1.1.27 from Staphylococcus aureus LDH2_STAAE / A6QK89: L-lactate dehydrogenase 2; L-LDH 2; EC 1.1.1.27 from Staphylococcus aureus	28% id, 95% cov
More...

CA265_RS08335: alpha-hydroxy-acid oxidizing enzyme is similar to:	PaperBLAST
Q44467: L-lactate dehydrogenase (EC 1.1.1.27); L-lactate oxidase (EC 1.1.3.2) from Aerococcus viridans	27% id, 87% cov

CA265_RS21010: hypothetical protein is similar to:	PaperBLAST
lutC / O32259: component of an iron-sulfur oxidase for L-lactate utilization (EC 1.1.1.27) from Bacillus subtilis	39% id, 45% cov
Q5F884: L-lactate dehydrogenase (subunit 2/3) (EC 1.1.1.27) from Neisseria gonorrhoeae	33% id, 49% cov
lutB / O07021: component of an iron-sulfur oxidase linked to L-lactate utilization (EC 1.1.1.27) from Bacillus subtilis	28% id, 29% cov

CA265_RS24860: alcohol dehydrogenase is similar to:	PaperBLAST
I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum	33% id, 47% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

762153-763124 (frame -1) on NZ_CP021237 is similar to:	PaperBLAST
CH_024078: L-lactate dehydrogenase; EC 1.1.1.27 from Babesia bovis Q7Z0X7: L-lactate dehydrogenase (EC 1.1.1.27) from Babesia bovis Also see hits to annotated proteins above	39% id, 98% cov
Q27797: L-lactate dehydrogenase (EC 1.1.1.27) from Toxoplasma gondii Also see hits to annotated proteins above	37% id, 99% cov
Q8I8U4: L-lactate dehydrogenase (EC 1.1.1.27) from Eimeria tenella Also see hits to annotated proteins above	36% id, 96% cov
Ldha / P04642: lactate dehydrogenase subunit (EC 1.1.1.27) from Rattus norvegicus Also see hits to annotated proteins above	35% id, 97% cov
LDHA_PIG / P00339: L-lactate dehydrogenase A chain; LDH-A; LDH muscle subunit; LDH-M; EC 1.1.1.27 from Sus scrofa P00339: L-lactate dehydrogenase (EC 1.1.1.27) from Sus scrofa Also see hits to annotated proteins above	34% id, 97% cov
LDH1_STAAC / Q5HJD7: L-lactate dehydrogenase 1; L-LDH 1; EC 1.1.1.27 from Staphylococcus aureus LDH1_STAAE / A6QDL6: L-lactate dehydrogenase 1; L-LDH 1; EC 1.1.1.27 from Staphylococcus aureus Also see hits to annotated proteins above	33% id, 99% cov
LDH6A_HUMAN / Q6ZMR3: L-lactate dehydrogenase A-like 6A; LDHA-like protein 6A; EC 1.1.1.27 from Homo sapiens Also see hits to annotated proteins above	33% id, 98% cov
LDHA_HUMAN / P00338: L-lactate dehydrogenase A chain; LDH-A; Cell proliferation-inducing gene 19 protein; LDH muscle subunit; LDH-M; Renal carcinoma antigen NY-REN-59; EC 1.1.1.27 from Homo sapiens P00338: L-lactate dehydrogenase (EC 1.1.1.27) from Homo sapiens Also see hits to annotated proteins above	33% id, 97% cov
LDH_LACLN / D8KFT1: L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Lactococcus lactis Also see hits to annotated proteins above	31% id, 100% cov
LDHC_MOUSE / P00342: L-lactate dehydrogenase C chain; LDH-C; LDH testis subunit; LDH-X; EC 1.1.1.27 from Mus musculus Also see hits to annotated proteins above	32% id, 95% cov
Q5E9B1: L-lactate dehydrogenase (EC 1.1.1.27) from Bos taurus Also see hits to annotated proteins above	32% id, 96% cov
ldh / P26283: L-lactate dehydrogenase subunit (EC 1.1.1.27) from Streptococcus mutans P26283: L-lactate dehydrogenase (EC 1.1.1.27) from Streptococcus mutans Also see hits to annotated proteins above	30% id, 96% cov
More...

6062136-6063305 (frame -1) on NZ_CP021237 is similar to:	PaperBLAST
I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum Also see hits to annotated proteins above	33% id, 48% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory