Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 25 curated entries in PaperBLAST's database that match '1.1.1.28' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS10420: hydroxyacid dehydrogenase
is similar to:
PaperBLAST

Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa

51% id,
99% cov

HtpH / b1380: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli
ldhA: D-lactate dehydrogenase; EC 1.1.1.28 from Escherichia coli
ldhA / P52643: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli

51% id,
98% cov

A0A140N893: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli

51% id,
98% cov

More...

CA265_RS09620: FAD-binding oxidoreductase
is similar to:
PaperBLAST

Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix

33% id,
99% cov

A0A0G2K1W9: D-lactate dehydrogenase (EC 1.1.1.28) from Rattus norvegicus

31% id,
95% cov

CA265_RS12240: phosphoglycerate dehydrogenase
is similar to:
PaperBLAST

O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus

30% id,
98% cov

F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus

36% id,
82% cov

vanH / Q7B609: D-lactate dehydrogenase (EC 1.1.1.28) from Enterococcus faecium

33% id,
84% cov

More...

CA265_RS09010: 3-phosphoglycerate dehydrogenase
is similar to:
PaperBLAST

O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus

32% id,
92% cov

CH_091801: D-lactate dehydrogenase; EC 1.1.1.28 from Leuconostoc mesenteroides
D-ldh / P51011: D-lactate dehydrogenase subunit (EC 1.1.1.28) from Leuconostoc mesenteroides

31% id,
92% cov

F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus

31% id,
90% cov

More...

CA265_RS17230: D-glycerate dehydrogenase
is similar to:
PaperBLAST

2KGR_VITVI / A5CAL1: Glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR; 2-keto-L-gulonate reductase; Vv2KGR; EC 1.1.1.26; EC 1.1.1.28; EC 1.1.1.79; EC 1.1.1.- from Vitis vinifera

35% id,
82% cov

LDHD_PEDAC / Q59642: D-lactate/D-glycerate dehydrogenase; D-LDH/GDH; D-specific 2-hydroxyacid dehydrogenase; EC 1.1.1.28; EC 1.1.1.29 from Pediococcus acidilactici
ldhD / GI|897794: D-lactate dehydrogenase; EC 1.1.1.28; EC 1.1.1.81 from Pediococcus acidilactici

28% id,
95% cov

Q8RG11: D-lactate dehydrogenase (EC 1.1.1.28) from Fusobacterium nucleatum

28% id,
88% cov

More...

CA265_RS23175: phosphoglycerate dehydrogenase
is similar to:
PaperBLAST

F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus

28% id,
95% cov

LDHD_LACDA / P26297: D-lactate dehydrogenase; D-LDH; D-specific 2-hydroxyacid dehydrogenase; EC 1.1.1.28 from Lactobacillus delbrueckii
ldhA / OMNI|NTL01LD0096: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus delbrueckii
P26297: D-lactate dehydrogenase (EC 1.1.1.28) from Lactobacillus delbrueckii

28% id,
93% cov

LDHD_PEDAC / Q59642: D-lactate/D-glycerate dehydrogenase; D-LDH/GDH; D-specific 2-hydroxyacid dehydrogenase; EC 1.1.1.28; EC 1.1.1.29 from Pediococcus acidilactici
ldhD / GI|897794: D-lactate dehydrogenase; EC 1.1.1.28; EC 1.1.1.81 from Pediococcus acidilactici

27% id,
93% cov

More...

CA265_RS01355: hypothetical protein
is similar to:
PaperBLAST

HtpH / b1380: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli
ldhA: D-lactate dehydrogenase; EC 1.1.1.28 from Escherichia coli
ldhA / P52643: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli

37% id,
32% cov

A0A140N893: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli

37% id,
32% cov

F8RPR8: D-lactate dehydrogenase (EC 1.1.1.28) from Bacillus coagulans

27% id,
38% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory