Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 35 curated entries in PaperBLAST's database that match '1.1.1.3' as complete word(s).

These curated entries have 29 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS23475: bifunctional aspartate kinase/homoserine dehydrogenase I is similar to:	PaperBLAST
CA265_RS23475: aspartate kinase; homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Pedobacter sp.	100% id, 100% cov
Echvi_2000: aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Echinicola vietnamensis	47% id, 100% cov
BT2403: aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Bacteroides thetaiotaomicron	44% id, 100% cov
Q5AIA2: homoserine dehydrogenase (EC 1.1.1.3) from Candida albicans	38% id, 99% cov
ThrD / b0002: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli thrA / P00561: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli P00561: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Escherichia coli	38% id, 99% cov
DHOM_YEAST / P31116: Homoserine dehydrogenase; HDH; EC 1.1.1.3 from Saccharomyces cerevisiae	38% id, 98% cov
AKH2_ARATH / O81852: Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic; AK-HD 2; AK-HSDH 2; Beta-aspartyl phosphate homoserine 2; EC 2.7.2.4; EC 1.1.1.3 from Arabidopsis thaliana	40% id, 90% cov
DHOM_EMENI / Q5B998: Homoserine dehydrogenase; HDH; EC 1.1.1.3 from Emericella nidulans AN2882: homoserine dehydrogenase; EC 1.1.1.3 from Emericella nidulans	37% id, 96% cov
AKH1_ARATH / Q9SA18: Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic; AK-HD 1; AK-HSDH 1; Beta-aspartyl phosphate homoserine 1; EC 2.7.2.4; EC 1.1.1.3 from Arabidopsis thaliana	39% id, 90% cov
O63067: homoserine dehydrogenase (EC 1.1.1.3) from Glycine max	39% id, 90% cov
C1GTZ6: homoserine dehydrogenase (EC 1.1.1.3) from Paracoccidioides lutzii	34% id, 98% cov
C1G1C3: homoserine dehydrogenase (EC 1.1.1.3) from Paracoccidioides brasiliensis	34% id, 98% cov
MetM / b3940: fused aspartate kinase/homoserine dehydrogenase 2 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli metL / P00562: fused aspartate kinase/homoserine dehydrogenase 2 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli	28% id, 98% cov
Q3S3F6: homoserine dehydrogenase (EC 1.1.1.3) from Glycine max	34% id, 75% cov
Q5SL04: homoserine dehydrogenase (EC 1.1.1.3) from Thermus thermophilus	25% id, 91% cov
DHOM_BACSU / P19582: Homoserine dehydrogenase; HDH; EC 1.1.1.3 from Bacillus subtilis P19582: homoserine dehydrogenase (EC 1.1.1.3) from Bacillus subtilis	29% id, 63% cov
D8WXQ1: homoserine dehydrogenase (EC 1.1.1.3) from Bacillus methanolicus	33% id, 50% cov
DvMF_1412: homoserine dehydrogenase (EC 1.1.1.3) from Desulfovibrio vulgaris	27% id, 63% cov
DHOM_CORGL / P08499: Homoserine dehydrogenase; HDH; EC 1.1.1.3 from Corynebacterium glutamicum P08499: homoserine dehydrogenase (EC 1.1.1.3) from Corynebacterium glutamicum	29% id, 55% cov
Q9WZ17: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Thermotoga maritima	32% id, 47% cov
DHOM_NEIG1 / Q5F8J4: NAD(+)-dependent homoserine dehydrogenase; NAD(+)-dependent HSD; NgHSD; EC 1.1.1.3 from Neisseria gonorrhoeae	29% id, 52% cov
O58802: homoserine dehydrogenase (EC 1.1.1.3) from Pyrococcus horikoshii	23% id, 50% cov
Q9WZ17: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Thermotoga maritima	28% id, 28% cov
More...

CA265_RS08170: homoserine dehydrogenase is similar to:	PaperBLAST
A0A0H2WVX4: homoserine dehydrogenase (EC 1.1.1.3) from Staphylococcus aureus	36% id, 85% cov
DHOM_BACSU / P19582: Homoserine dehydrogenase; HDH; EC 1.1.1.3 from Bacillus subtilis P19582: homoserine dehydrogenase (EC 1.1.1.3) from Bacillus subtilis	31% id, 97% cov
F9VNG5: homoserine dehydrogenase (EC 1.1.1.3) from Sulfurisphaera tokodaii	30% id, 99% cov
Ga0059261_2711: homoserine dehydrogenase (EC 1.1.1.3) from Sphingomonas koreensis	30% id, 96% cov
DHOM_LACLC / P52985: Homoserine dehydrogenase; HDH; EC 1.1.1.3 from Lactococcus lactis	33% id, 87% cov
O58802: homoserine dehydrogenase (EC 1.1.1.3) from Pyrococcus horikoshii	28% id, 98% cov
D8WXQ1: homoserine dehydrogenase (EC 1.1.1.3) from Bacillus methanolicus	31% id, 86% cov
Q5SL04: homoserine dehydrogenase (EC 1.1.1.3) from Thermus thermophilus	29% id, 91% cov
DHOM_NEIG1 / Q5F8J4: NAD(+)-dependent homoserine dehydrogenase; NAD(+)-dependent HSD; NgHSD; EC 1.1.1.3 from Neisseria gonorrhoeae	36% id, 72% cov
DvMF_1412: homoserine dehydrogenase (EC 1.1.1.3) from Desulfovibrio vulgaris	36% id, 73% cov
D8WXQ2: homoserine dehydrogenase (EC 1.1.1.3) from Bacillus methanolicus	27% id, 91% cov
DHOM_CORGL / P08499: Homoserine dehydrogenase; HDH; EC 1.1.1.3 from Corynebacterium glutamicum P08499: homoserine dehydrogenase (EC 1.1.1.3) from Corynebacterium glutamicum	34% id, 71% cov
Q56R01: homoserine dehydrogenase (EC 1.1.1.3) from Streptomyces clavuligerus	33% id, 74% cov
P46806: homoserine dehydrogenase (EC 1.1.1.3) from Mycobacterium leprae	32% id, 72% cov
Q9WZ17: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Thermotoga maritima	26% id, 50% cov
More...

CA265_RS09655: aspartate kinase is similar to:	PaperBLAST
CA265_RS23475: aspartate kinase; homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Pedobacter sp.	35% id, 56% cov
Echvi_2000: aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Echinicola vietnamensis	31% id, 56% cov
ThrD / b0002: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli thrA / P00561: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli P00561: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Escherichia coli	28% id, 56% cov
BT2403: aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Bacteroides thetaiotaomicron	28% id, 56% cov
MetM / b3940: fused aspartate kinase/homoserine dehydrogenase 2 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli metL / P00562: fused aspartate kinase/homoserine dehydrogenase 2 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli	27% id, 55% cov
AKH2_ARATH / O81852: Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic; AK-HD 2; AK-HSDH 2; Beta-aspartyl phosphate homoserine 2; EC 2.7.2.4; EC 1.1.1.3 from Arabidopsis thaliana	28% id, 51% cov
AKH1_ARATH / Q9SA18: Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic; AK-HD 1; AK-HSDH 1; Beta-aspartyl phosphate homoserine 1; EC 2.7.2.4; EC 1.1.1.3 from Arabidopsis thaliana	27% id, 51% cov
O63067: homoserine dehydrogenase (EC 1.1.1.3) from Glycine max	27% id, 51% cov
Q9WZ17: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Thermotoga maritima	22% id, 52% cov
More...

CA265_RS06275: aspartate kinase is similar to:	PaperBLAST
Echvi_2000: aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Echinicola vietnamensis	31% id, 47% cov
CA265_RS23475: aspartate kinase; homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Pedobacter sp.	30% id, 48% cov
BT2403: aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Bacteroides thetaiotaomicron	30% id, 47% cov
ThrD / b0002: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli thrA / P00561: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli P00561: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Escherichia coli	28% id, 47% cov
AKH1_ARATH / Q9SA18: Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic; AK-HD 1; AK-HSDH 1; Beta-aspartyl phosphate homoserine 1; EC 2.7.2.4; EC 1.1.1.3 from Arabidopsis thaliana	28% id, 42% cov
Q9WZ17: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Thermotoga maritima	27% id, 41% cov
AKH2_ARATH / O81852: Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic; AK-HD 2; AK-HSDH 2; Beta-aspartyl phosphate homoserine 2; EC 2.7.2.4; EC 1.1.1.3 from Arabidopsis thaliana	29% id, 35% cov
MetM / b3940: fused aspartate kinase/homoserine dehydrogenase 2 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli metL / P00562: fused aspartate kinase/homoserine dehydrogenase 2 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli	28% id, 36% cov
O63067: homoserine dehydrogenase (EC 1.1.1.3) from Glycine max	30% id, 32% cov
More...

CA265_RS18935: UMP kinase is similar to:	PaperBLAST
ThrD / b0002: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli thrA / P00561: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli P00561: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Escherichia coli	30% id, 12% cov
O63067: homoserine dehydrogenase (EC 1.1.1.3) from Glycine max	29% id, 9% cov
AKH2_ARATH / O81852: Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic; AK-HD 2; AK-HSDH 2; Beta-aspartyl phosphate homoserine 2; EC 2.7.2.4; EC 1.1.1.3 from Arabidopsis thaliana	27% id, 10% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory