Curated BLAST for Genomes


Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 67 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 46 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS02350: isocitrate dehydrogenase (NADP(+))
is similar to:

IDH_AZOVI / P16100: Isocitrate dehydrogenase [NADP]; IDH; Oxalosuccinate decarboxylase; EC from Azotobacter vinelandii
icd / P16100: isocitrate dehydrogenase (NADP-dependent) (EC from Azotobacter vinelandii

68% id,
100% cov

idh / Q8L0X8: isocitrate dehydrogenase (EC from Chlorobium limicola

66% id,
100% cov

Q1XIQ9: isocitrate dehydrogenase (NADP+) (EC from Colwellia psychrerythraea

67% id,
100% cov


CA265_RS15850: 3-isopropylmalate dehydrogenase
is similar to:

O29610: isocitrate dehydrogenase (NADP+) (EC from Archaeoglobus fulgidus

27% id,
93% cov

icd / RF|YP_144801.1: isocitrate dehydrogenase (NADP(+)); EC from Thermus thermophilus
P33197: isocitrate dehydrogenase (NADP+) (EC from Thermus thermophilus

33% id,
63% cov

P96318: isocitrate dehydrogenase (NADP+) (EC from Caldococcus noboribetus

32% id,
53% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory