Curated BLAST for Genomes


Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 36 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 26 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS09805: phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating)
is similar to:

6PGD_BACSU / P80859: 6-phosphogluconate dehydrogenase, NADP(+)-dependent, decarboxylating; GNTZII; EC from Bacillus subtilis
gndA / P80859: 6-phosphogluconate dehydrogenase (decarboxylating) (EC from Bacillus subtilis
P80859: phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) (EC from Bacillus subtilis

48% id,
100% cov

P96789: phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) (EC from Lactococcus lactis

46% id,
98% cov

6PGD1_SPIOL / Q94KU1: 6-phosphogluconate dehydrogenase, decarboxylating 1; EC from Spinacia oleracea

46% id,
98% cov


CA265_RS01080: 6-phosphogluconate dehydrogenase
is similar to:

Q762L5: phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) (EC from Klebsiella pneumoniae

25% id,
51% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory