Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 14 curated entries in PaperBLAST's database that match '1.1.1.71' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 26 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS12755: hydroxyacid dehydrogenase is similar to:	PaperBLAST
Q8H0L8: alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Solanum tuberosum	53% id, 96% cov

CA265_RS12005: glutathione-dependent formaldehyde dehydrogenase is similar to:	PaperBLAST
D4GP73: alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Haloferax volcanii	35% id, 99% cov
Q9HMB6: alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Halobacterium sp.	34% id, 100% cov
Q5V676: alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Haloarcula marismortui	34% id, 90% cov
Q8H0L8: alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Solanum tuberosum	32% id, 47% cov
More...

CA265_RS16010: short-chain dehydrogenase is similar to:	PaperBLAST
C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus	34% id, 95% cov

CA265_RS15110: NAD(P)-dependent oxidoreductase is similar to:	PaperBLAST
C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus	30% id, 98% cov

CA265_RS05960: short-chain dehydrogenase is similar to:	PaperBLAST
C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus	32% id, 88% cov

CA265_RS24860: alcohol dehydrogenase is similar to:	PaperBLAST
O58517: alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Pyrococcus horikoshii	28% id, 99% cov
A0A0H3W5V0: alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermoanaerobacterium saccharolyticum	33% id, 47% cov
A0A0H3W5U9: alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Acetivibrio thermocellus	31% id, 47% cov

CA265_RS05850: oxidoreductase is similar to:	PaperBLAST
Q9HBH5: NADP-retinol dehydrogenase (EC 1.1.1.300); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Homo sapiens	31% id, 88% cov

CA265_RS02405: short-chain dehydrogenase is similar to:	PaperBLAST
C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus	27% id, 97% cov

CA265_RS22580: short-chain dehydrogenase is similar to:	PaperBLAST
C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus	31% id, 78% cov
Q9HBH5: NADP-retinol dehydrogenase (EC 1.1.1.300); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Homo sapiens	27% id, 32% cov

CA265_RS18725: short-chain dehydrogenase is similar to:	PaperBLAST
C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus	25% id, 97% cov

CA265_RS09915: short-chain dehydrogenase/reductase is similar to:	PaperBLAST
C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus	29% id, 82% cov

CA265_RS17465: hypothetical protein is similar to:	PaperBLAST
C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus	25% id, 92% cov

CA265_RS23255: short-chain dehydrogenase/reductase is similar to:	PaperBLAST
CBR1_MOUSE / P48758: Carbonyl reductase [NADPH] 1; 15-hydroxyprostaglandin dehydrogenase [NADP(+)]; 20-beta-hydroxysteroid dehydrogenase; Alcohol dehydrogenase [NAD(P)+] CBR1; NADPH-dependent carbonyl reductase 1; Prostaglandin 9-ketoreductase; PG-9-KR; Prostaglandin-E(2) 9-reductase; EC 1.1.1.184; EC 1.1.1.196; EC 1.1.1.197; EC 1.1.1.71; EC 1.1.1.189 from Mus musculus	23% id, 99% cov

CA265_RS04990: short chain dehydrogenase is similar to:	PaperBLAST
C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus	31% id, 71% cov
Q9HBH5: NADP-retinol dehydrogenase (EC 1.1.1.300); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Homo sapiens	25% id, 63% cov

CA265_RS00310: oxidoreductase is similar to:	PaperBLAST
C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus	28% id, 78% cov
Q9HBH5: NADP-retinol dehydrogenase (EC 1.1.1.300); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Homo sapiens	27% id, 63% cov
CBR1_HUMAN / P16152: Carbonyl reductase [NADPH] 1; 15-hydroxyprostaglandin dehydrogenase [NADP(+)]; 20-beta-hydroxysteroid dehydrogenase; Alcohol dehydrogenase [NAD(P)+] CBR1; NADPH-dependent carbonyl reductase 1; Prostaglandin 9-ketoreductase; PG-9-KR; Prostaglandin-E(2) 9-reductase; Short chain dehydrogenase/reductase family 21C member 1; EC 1.1.1.184; EC 1.1.1.196; EC 1.1.1.197; EC 1.1.1.71; EC 1.1.1.189 from Homo sapiens	29% id, 53% cov

CA265_RS13715: glucose dehydrogenase is similar to:	PaperBLAST
C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus	29% id, 76% cov
Q9HBH5: NADP-retinol dehydrogenase (EC 1.1.1.300); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Homo sapiens	25% id, 79% cov

CA265_RS04665: short-chain dehydrogenase is similar to:	PaperBLAST
C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus	28% id, 77% cov

CA265_RS00760: 2-deoxy-D-gluconate 3-dehydrogenase is similar to:	PaperBLAST
C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus	28% id, 78% cov

CA265_RS07350: alcohol dehydrogenase is similar to:	PaperBLAST
Q9HMB6: alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Halobacterium sp.	23% id, 83% cov
D4GP73: alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Haloferax volcanii	25% id, 77% cov

CA265_RS18160: short chain dehydrogenase is similar to:	PaperBLAST
C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus	25% id, 78% cov

CA265_RS15450: 3-oxoacyl-[acyl-carrier-protein] reductase is similar to:	PaperBLAST
C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus	36% id, 51% cov
Q9HBH5: NADP-retinol dehydrogenase (EC 1.1.1.300); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Homo sapiens	27% id, 64% cov
CBR1_RAT / P47727: Carbonyl reductase [NADPH] 1; 15-hydroxyprostaglandin dehydrogenase [NADP(+)]; 20-beta-hydroxysteroid dehydrogenase; Alcohol dehydrogenase [NAD(P)+] CBR1; NADPH-dependent carbonyl reductase 1; Prostaglandin 9-ketoreductase; PG-9-KR; Prostaglandin-E(2) 9-reductase; EC 1.1.1.184; EC 1.1.1.196; EC 1.1.1.197; EC 1.1.1.71; EC 1.1.1.189 from Rattus norvegicus	28% id, 49% cov
CBR1_MOUSE / P48758: Carbonyl reductase [NADPH] 1; 15-hydroxyprostaglandin dehydrogenase [NADP(+)]; 20-beta-hydroxysteroid dehydrogenase; Alcohol dehydrogenase [NAD(P)+] CBR1; NADPH-dependent carbonyl reductase 1; Prostaglandin 9-ketoreductase; PG-9-KR; Prostaglandin-E(2) 9-reductase; EC 1.1.1.184; EC 1.1.1.196; EC 1.1.1.197; EC 1.1.1.71; EC 1.1.1.189 from Mus musculus	26% id, 49% cov
CBR1_PIG / Q28960: Carbonyl reductase [NADPH] 1; 15-hydroxyprostaglandin dehydrogenase [NADP(+)]; 20-beta-hydroxysteroid dehydrogenase; Alcohol dehydrogenase [NAD(P)+] CBR1; NADPH-dependent carbonyl reductase 1; Prostaglandin 9-ketoreductase; PG-9-KR; Prostaglandin-E(2) 9-reductase; EC 1.1.1.184; EC 1.1.1.196; EC 1.1.1.197; EC 1.1.1.71; EC 1.1.1.189 from Sus scrofa	33% id, 31% cov
More...

CA265_RS08650: short-chain dehydrogenase is similar to:	PaperBLAST
Q9HBH5: NADP-retinol dehydrogenase (EC 1.1.1.300); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Homo sapiens	25% id, 71% cov

CA265_RS09980: NAD(P)-dependent oxidoreductase is similar to:	PaperBLAST
CBR1_MOUSE / P48758: Carbonyl reductase [NADPH] 1; 15-hydroxyprostaglandin dehydrogenase [NADP(+)]; 20-beta-hydroxysteroid dehydrogenase; Alcohol dehydrogenase [NAD(P)+] CBR1; NADPH-dependent carbonyl reductase 1; Prostaglandin 9-ketoreductase; PG-9-KR; Prostaglandin-E(2) 9-reductase; EC 1.1.1.184; EC 1.1.1.196; EC 1.1.1.197; EC 1.1.1.71; EC 1.1.1.189 from Mus musculus	29% id, 53% cov
CBR1_RAT / P47727: Carbonyl reductase [NADPH] 1; 15-hydroxyprostaglandin dehydrogenase [NADP(+)]; 20-beta-hydroxysteroid dehydrogenase; Alcohol dehydrogenase [NAD(P)+] CBR1; NADPH-dependent carbonyl reductase 1; Prostaglandin 9-ketoreductase; PG-9-KR; Prostaglandin-E(2) 9-reductase; EC 1.1.1.184; EC 1.1.1.196; EC 1.1.1.197; EC 1.1.1.71; EC 1.1.1.189 from Rattus norvegicus	28% id, 55% cov

CA265_RS08605: short-chain dehydrogenase is similar to:	PaperBLAST
CBR1_MOUSE / P48758: Carbonyl reductase [NADPH] 1; 15-hydroxyprostaglandin dehydrogenase [NADP(+)]; 20-beta-hydroxysteroid dehydrogenase; Alcohol dehydrogenase [NAD(P)+] CBR1; NADPH-dependent carbonyl reductase 1; Prostaglandin 9-ketoreductase; PG-9-KR; Prostaglandin-E(2) 9-reductase; EC 1.1.1.184; EC 1.1.1.196; EC 1.1.1.197; EC 1.1.1.71; EC 1.1.1.189 from Mus musculus	25% id, 60% cov

CA265_RS08355: short-chain dehydrogenase is similar to:	PaperBLAST
CBR1_MOUSE / P48758: Carbonyl reductase [NADPH] 1; 15-hydroxyprostaglandin dehydrogenase [NADP(+)]; 20-beta-hydroxysteroid dehydrogenase; Alcohol dehydrogenase [NAD(P)+] CBR1; NADPH-dependent carbonyl reductase 1; Prostaglandin 9-ketoreductase; PG-9-KR; Prostaglandin-E(2) 9-reductase; EC 1.1.1.184; EC 1.1.1.196; EC 1.1.1.197; EC 1.1.1.71; EC 1.1.1.189 from Mus musculus	26% id, 51% cov

CA265_RS14445: 3-oxoacyl-ACP reductase is similar to:	PaperBLAST
C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus	30% id, 37% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 26 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

5684832-5685719 (frame +3) on NZ_CP021237
is similar to:

PaperBLAST

CBR1_HUMAN / P16152: Carbonyl reductase [NADPH] 1; 15-hydroxyprostaglandin dehydrogenase [NADP(+)]; 20-beta-hydroxysteroid dehydrogenase; Alcohol dehydrogenase [NAD(P)+] CBR1; NADPH-dependent carbonyl reductase 1; Prostaglandin 9-ketoreductase; PG-9-KR; Prostaglandin-E(2) 9-reductase; Short chain dehydrogenase/reductase family 21C member 1; EC 1.1.1.184; EC 1.1.1.196; EC 1.1.1.197; EC 1.1.1.71; EC 1.1.1.189 from Homo sapiens
Also see hits to annotated proteins above

24% id,
98% cov

6062136-6063305 (frame -1) on NZ_CP021237 is similar to:	PaperBLAST
A0A0H3W5V0: alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermoanaerobacterium saccharolyticum Also see hits to annotated proteins above	33% id, 48% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory