Curated BLAST for Genomes


Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 60 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 46 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS15850: 3-isopropylmalate dehydrogenase
is similar to:

P31958: 3-isopropylmalate dehydrogenase (EC from Clostridium pasteurianum

51% id,
100% cov

LEU3_HEYCO / P12010: 3-isopropylmalate dehydrogenase; 3-IPM-DH; Beta-IPM dehydrogenase; IMDH; EC from Heyndrickxia coagulans

52% id,
98% cov

P43860: 3-isopropylmalate dehydrogenase (EC from Haemophilus influenzae

51% id,
99% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory