Curated BLAST for Genomes


Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 14 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS09620: FAD-binding oxidoreductase
is similar to:

D2HDH_XANCL / P0DV35: D-2-hydroxyglutarate dehydrogenase; D2HGDH; EC from Xanthomonas citri

34% id,
97% cov

D2HDH_STUS1 / A4VGK4: D-2-hydroxyglutarate dehydrogenase; D-2-HG dehydrogenase; D2HGDH; D-malate dehydrogenase; EC; EC 1.1.99.- from Stutzerimonas stutzeri

32% id,
99% cov

D2HDH_HUMAN / Q8N465: D-2-hydroxyglutarate dehydrogenase, mitochondrial; EC from Homo sapiens
D2HGDH / Q8N465: D-2-hydroxyglutarate dehydrogenase, mitochondrial (EC from Homo sapiens
Q8N465: D-2-hydroxyglutarate dehydrogenase (EC from Homo sapiens

30% id,
89% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory