Curated BLAST for Genomes


Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 16 curated entries in PaperBLAST's database that match ''.

These curated entries have 15 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS09620: FAD-binding oxidoreductase
is similar to:

DLD_ARCFU / O29853: D-lactate dehydrogenase (acceptor); EC from Archaeoglobus fulgidus
O29853: D-lactate dehydrogenase (acceptor) (EC from Archaeoglobus fulgidus

38% id,
97% cov

Q9YEU4: D-lactate dehydrogenase (EC; D-lactate dehydrogenase (acceptor) (EC from Aeropyrum pernix

33% id,
99% cov

RR42_RS17300: D-lactate dehydrogenase, FAD-linked subunit GlcD (EC from Cupriavidus basilensis

35% id,
91% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory