Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 20 curated entries in PaperBLAST's database that match '1.13.11.5' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS03135: homogentisate 1,2-dioxygenase
is similar to:
PaperBLAST

SO1963: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Shewanella oneidensis

47% id,
100% cov

Psest_3513: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Pseudomonas stutzeri

33% id,
96% cov

RR42_RS31275: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Cupriavidus basilensis

25% id,
65% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory