Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 22 curated entries in PaperBLAST's database that match '1.17.1.8'.

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS15670: 4-hydroxy-tetrahydrodipicolinate reductase
is similar to:
PaperBLAST

CA265_RS15670: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Pedobacter sp.

100% id,
100% cov

Echvi_2395: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Echinicola vietnamensis

51% id,
98% cov

Q5HG24: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Staphylococcus aureus

33% id,
100% cov

More...

CA265_RS02050: 4-hydroxy-tetrahydrodipicolinate synthase
is similar to:
PaperBLAST

Q3M723: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Trichormus variabilis

40% id,
100% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory