Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 101 curated entries in PaperBLAST's database that match '1.2.1.10'.

These curated entries have 73 distinct sequences.

Running ublast with E ≤ 0.01

Found 28 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS17525: dihydrolipoamide succinyltransferase
is similar to:
PaperBLAST

P0AFG6: 2-oxoglutarate dehydrogenase system (EC 1.2.1.105); dihydrolipoyllysine-residue succinyltransferase (EC 2.3.1.61) from Escherichia coli

51% id,
100% cov

P36957: 2-oxoglutarate dehydrogenase system (subunit 2/3) (EC 1.2.1.105) from Homo sapiens

44% id,
85% cov

pdhC / P75392: pyruvate dehydrogenase (EC 1.2.1.104) from Mycoplasma pneumoniae

31% id,
98% cov

More...

CA265_RS24150: dihydrolipoyl dehydrogenase
is similar to:
PaperBLAST

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

52% id,
93% cov

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens
A0A024R713: 2-oxoglutarate dehydrogenase system (subunit 3/3) (EC 1.2.1.105) from Homo sapiens

50% id,
92% cov

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

41% id,
95% cov

More...

CA265_RS18860: alpha-ketoacid dehydrogenase subunit beta
is similar to:
PaperBLAST

Q38799: pyruvate dehydrogenase system (subunit 1/2) (EC 1.2.1.104); pyruvate dehydrogenase (acetyl-transferring) (subunit 1/2) (EC 1.2.4.1) from Arabidopsis thaliana

51% id,
91% cov

Q9D051: pyruvate dehydrogenase system (subunit 1/2) (EC 1.2.1.104) from Mus musculus

51% id,
91% cov

P52904: pyruvate dehydrogenase system (subunit 3/3) (EC 1.2.1.104) from Pisum sativum

51% id,
91% cov

More...

CA265_RS01860: type I glyceraldehyde-3-phosphate dehydrogenase
is similar to:
PaperBLAST

gap3 / A0A071L3D0: glyceraldehyde-3-phosphate dehydrogenase (arsenate-transferring) (EC 1.2.1.107) from Pseudomonas aeruginosa
A0A071L3D0: glyceraldehyde-3-phosphate dehydrogenase (arsenate-transferring) (EC 1.2.1.107) from Pseudomonas aeruginosa

46% id,
98% cov

CA265_RS17530: 2-oxoglutarate dehydrogenase E1 component
is similar to:
PaperBLAST

P0AFG3: 2-oxoglutarate dehydrogenase system (EC 1.2.1.105) from Escherichia coli

44% id,
99% cov

F4IWV2: 2-oxoglutarate dehydrogenase system (EC 1.2.1.105); oxoglutarate dehydrogenase (succinyl-transferring) (EC 1.2.4.2) from Arabidopsis thaliana

44% id,
94% cov

Q9FLH2: 2-oxoglutarate dehydrogenase system (EC 1.2.1.105); oxoglutarate dehydrogenase (succinyl-transferring) (EC 1.2.4.2) from Arabidopsis thaliana

43% id,
93% cov

More...

CA265_RS05155: dihydrolipoyl dehydrogenase
is similar to:
PaperBLAST

Q8NTE1: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105) from Corynebacterium glutamicum

44% id,
99% cov

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

41% id,
92% cov

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens
A0A024R713: 2-oxoglutarate dehydrogenase system (subunit 3/3) (EC 1.2.1.105) from Homo sapiens

38% id,
92% cov

More...

CA265_RS19580: pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha
is similar to:
PaperBLAST

P74490: pyruvate dehydrogenase system (subunit 2/2) (EC 1.2.1.104); pyruvate dehydrogenase (acetyl-transferring) (subunit 2/2) (EC 1.2.4.1) from Synechocystis sp.

44% id,
96% cov

P52903: pyruvate dehydrogenase system (subunit 2/2) (EC 1.2.1.104) from Solanum tuberosum

48% id,
82% cov

P08559: pyruvate dehydrogenase system (subunit 2/2) (EC 1.2.1.104); pyruvate dehydrogenase (acetyl-transferring) (subunit 2/2) (EC 1.2.4.1) from Homo sapiens

45% id,
82% cov

More...

CA265_RS02185: type I glyceraldehyde-3-phosphate dehydrogenase
is similar to:
PaperBLAST

gap3 / A0A071L3D0: glyceraldehyde-3-phosphate dehydrogenase (arsenate-transferring) (EC 1.2.1.107) from Pseudomonas aeruginosa
A0A071L3D0: glyceraldehyde-3-phosphate dehydrogenase (arsenate-transferring) (EC 1.2.1.107) from Pseudomonas aeruginosa

41% id,
98% cov

CA265_RS18405: dehydrogenase
is similar to:
PaperBLAST

P73405: pyruvate dehydrogenase system (subunit 1/2) (EC 1.2.1.104); pyruvate dehydrogenase (acetyl-transferring) (subunit 1/2) (EC 1.2.4.1) from Synechocystis sp.

41% id,
92% cov

P52904: pyruvate dehydrogenase system (subunit 3/3) (EC 1.2.1.104) from Pisum sativum

35% id,
96% cov

Q38799: pyruvate dehydrogenase system (subunit 1/2) (EC 1.2.1.104); pyruvate dehydrogenase (acetyl-transferring) (subunit 1/2) (EC 1.2.4.1) from Arabidopsis thaliana

38% id,
88% cov

More...

CA265_RS19585: pyruvate dehydrogenase
is similar to:
PaperBLAST

P20285: pyruvate dehydrogenase system (EC 1.2.1.104) from Neurospora crassa

40% id,
92% cov

Q8RWN9: pyruvate dehydrogenase system (subunit 1/2) (EC 1.2.1.104) from Arabidopsis thaliana

41% id,
79% cov

P10515: pyruvate dehydrogenase system (subunit 2/5) (EC 1.2.1.104) from Homo sapiens

38% id,
85% cov

More...

CA265_RS18540: N-acetyl-gamma-glutamyl-phosphate reductase
is similar to:
PaperBLAST

Q5JFW1: [amino-group carrier protein]-5-phospho-L-glutamate reductase (EC 1.2.1.106) from Thermococcus kodakarensis

35% id,
99% cov

LYSY_THET2 / O50146: [LysW]-L-2-aminoadipate 6-phosphate reductase; EC 1.2.1.103 from Thermus thermophilus
lysY / O50146: [amino-group carrier protein]-L-2-aminoadipate 6-phosphate reductase (EC 1.2.1.103) from Thermus thermophilus
O50146: [amino group carrier protein]-6-phospho-L-2-aminoadipate reductase (EC 1.2.1.103); [amino-group carrier protein]-5-phospho-L-glutamate reductase (EC 1.2.1.106) from Thermus thermophilus

33% id,
97% cov

lysY / Q4JAQ3: [amino-group carrier protein]-L-2-aminoadipate/[amino-group carrier protein]-L-glutamate phosphate reductase (EC 1.2.1.103; EC 1.2.1.106) from Sulfolobus acidocaldarius
Q4JAQ3: [amino-group carrier protein]-5-phospho-L-glutamate reductase (EC 1.2.1.106) from Sulfolobus acidocaldarius

32% id,
98% cov

CA265_RS09070: diapophytoene dehydrogenase
is similar to:
PaperBLAST

P0AFG6: 2-oxoglutarate dehydrogenase system (EC 1.2.1.105); dihydrolipoyllysine-residue succinyltransferase (EC 2.3.1.61) from Escherichia coli

31% id,
98% cov

O00330: pyruvate dehydrogenase system (subunit 3/5) (EC 1.2.1.104) from Homo sapiens

28% id,
88% cov

P20285: pyruvate dehydrogenase system (EC 1.2.1.104) from Neurospora crassa

27% id,
90% cov

More...

CA265_RS07715: 3-hydroxybutyryl-CoA dehydrogenase
is similar to:
PaperBLAST

FHMCD_RHILO / Q988C8: 5-formyl-3-hydroxy-2-methylpyridine 4-carboxylate 5-dehydrogenase; FHMPC dehydrogenase; EC 1.2.1.100 from Mesorhizobium japonicum
mlr6793 / Q988C8: 5-formyl-3-hydroxy-2-methylpyridine 4-carboxylate 5-dehydrogenase monomer (EC 1.2.1.100) from Mesorhizobium japonicum
Q988C8: 4-pyridoxic acid dehydrogenase (EC 1.1.99.42); 5-formyl-3-hydroxy-2-methylpyridine 4-carboxylic acid 5-dehydrogenase (EC 1.2.1.100) from Mesorhizobium japonicum

32% id,
96% cov

CA265_RS11665: transketolase
is similar to:
PaperBLAST

P73405: pyruvate dehydrogenase system (subunit 1/2) (EC 1.2.1.104); pyruvate dehydrogenase (acetyl-transferring) (subunit 1/2) (EC 1.2.4.1) from Synechocystis sp.

29% id,
97% cov

P11177: pyruvate dehydrogenase system (subunit 1/2) (EC 1.2.1.104); pyruvate dehydrogenase (acetyl-transferring) (subunit 1/2) (EC 1.2.4.1) from Homo sapiens

29% id,
91% cov

P52904: pyruvate dehydrogenase system (subunit 3/3) (EC 1.2.1.104) from Pisum sativum

28% id,
94% cov

More...

CA265_RS17590: 3-hydroxyacyl-CoA dehydrogenase
is similar to:
PaperBLAST

FHMCD_RHILO / Q988C8: 5-formyl-3-hydroxy-2-methylpyridine 4-carboxylate 5-dehydrogenase; FHMPC dehydrogenase; EC 1.2.1.100 from Mesorhizobium japonicum
mlr6793 / Q988C8: 5-formyl-3-hydroxy-2-methylpyridine 4-carboxylate 5-dehydrogenase monomer (EC 1.2.1.100) from Mesorhizobium japonicum
Q988C8: 4-pyridoxic acid dehydrogenase (EC 1.1.99.42); 5-formyl-3-hydroxy-2-methylpyridine 4-carboxylic acid 5-dehydrogenase (EC 1.2.1.100) from Mesorhizobium japonicum

27% id,
97% cov

CA265_RS15185: transketolase
is similar to:
PaperBLAST

G0RYE0: pyruvate dehydrogenase system (subunit 1/2) (EC 1.2.1.104); pyruvate dehydrogenase (acetyl-transferring) (subunit 1/2) (EC 1.2.4.1) from Chaetomium thermophilum

28% id,
86% cov

Q9D051: pyruvate dehydrogenase system (subunit 1/2) (EC 1.2.1.104) from Mus musculus

29% id,
77% cov

CA265_RS15805: acetolactate synthase, large subunit, biosynthetic type
is similar to:
PaperBLAST

D9J047: pyruvate dehydrogenase system (EC 1.2.1.104); pyruvate decarboxylase (EC 4.1.1.1) from Zymomonas mobilis

23% id,
97% cov

CA265_RS14635: aldehyde dehydrogenase
is similar to:
PaperBLAST

B0K315: acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacter sp.

23% id,
84% cov

CA265_RS25100: hypothetical protein
is similar to:
PaperBLAST

Q8NTE1: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105) from Corynebacterium glutamicum

26% id,
67% cov

pdhD / P75393: pyruvate dehydrogenase complex E3 component (EC 1.2.1.104) from Mycoplasma pneumoniae

21% id,
66% cov

CA265_RS09995: nitrite reductase (NAD(P)H)
is similar to:
PaperBLAST

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

23% id,
74% cov

CA265_RS24860: alcohol dehydrogenase
is similar to:
PaperBLAST

A0A0H3W5K4: acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum
I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

33% id,
47% cov

A0A1D3TRQ6: acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Anaerobium acetethylicum

32% id,
47% cov

B0K4A2: alcohol dehydrogenase (EC 1.1.1.1); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacter sp.

33% id,
46% cov

More...

CA265_RS10630: thioredoxin-disulfide reductase
is similar to:
PaperBLAST

pdhD / P75393: pyruvate dehydrogenase complex E3 component (EC 1.2.1.104) from Mycoplasma pneumoniae

24% id,
66% cov

CA265_RS10015: NAD(P)H-nitrite reductase
is similar to:
PaperBLAST

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens
A0A024R713: 2-oxoglutarate dehydrogenase system (subunit 3/3) (EC 1.2.1.105) from Homo sapiens

28% id,
45% cov

pdhD / P75393: pyruvate dehydrogenase complex E3 component (EC 1.2.1.104) from Mycoplasma pneumoniae

28% id,
41% cov

CA265_RS22740: translation initiation factor IF-2
is similar to:
PaperBLAST

P36957: 2-oxoglutarate dehydrogenase system (subunit 2/3) (EC 1.2.1.105) from Homo sapiens

25% id,
42% cov

AF123459 / Q9XYS5: dihydrolipoyl dehydrogenase-binding protein (EC 1.2.1.104) from Ascaris suum

27% id,
26% cov

CA265_RS00435: aldo/keto reductase
is similar to:
PaperBLAST

Q988H5: 4-pyridoxic acid dehydrogenase (EC 1.1.99.42); 5-formyl-3-hydroxy-2-methylpyridine 4-carboxylic acid 5-dehydrogenase (EC 1.2.1.100) from Mesorhizobium loti

32% id,
33% cov

CA265_RS00035: FAD-binding protein
is similar to:
PaperBLAST

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens
A0A024R713: 2-oxoglutarate dehydrogenase system (subunit 3/3) (EC 1.2.1.105) from Homo sapiens

25% id,
32% cov

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

48% id,
6% cov

CA265_RS15180: transketolase
is similar to:
PaperBLAST

P0AFG8: pyruvate dehydrogenase system (EC 1.2.1.104) from Escherichia coli

29% id,
24% cov

Q8NNF6: pyruvate dehydrogenase system (subunit 3/3) (EC 1.2.1.104); pyruvate dehydrogenase (acetyl-transferring) (EC 1.2.4.1) from Corynebacterium glutamicum

28% id,
24% cov

CA265_RS02010: cell division protein FtsQ
is similar to:
PaperBLAST

Q8NNJ2: pyruvate dehydrogenase system (subunit 2/3) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 2/3) (EC 1.2.1.105); dihydrolipoyllysine-residue succinyltransferase (EC 2.3.1.61) from Corynebacterium glutamicum

25% id,
25% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 25 reading frames. Except for 3 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

5881435-5882913 (frame +1) on NZ_CP021237
is similar to:
PaperBLAST

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum
Also see hits to annotated proteins above

51% id,
96% cov

4854031-4855107 (frame +1) on NZ_CP021237
is similar to:
PaperBLAST

P74490: pyruvate dehydrogenase system (subunit 2/2) (EC 1.2.1.104); pyruvate dehydrogenase (acetyl-transferring) (subunit 2/2) (EC 1.2.4.1) from Synechocystis sp.
Also see hits to annotated proteins above

44% id,
99% cov

P52903: pyruvate dehydrogenase system (subunit 2/2) (EC 1.2.1.104) from Solanum tuberosum
Also see hits to annotated proteins above

47% id,
84% cov

P08559: pyruvate dehydrogenase system (subunit 2/2) (EC 1.2.1.104); pyruvate dehydrogenase (acetyl-transferring) (subunit 2/2) (EC 1.2.4.1) from Homo sapiens
Also see hits to annotated proteins above

43% id,
91% cov

More...

6062136-6063305 (frame -1) on NZ_CP021237
is similar to:
PaperBLAST

A0A0H3W5K4: acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum
I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum
Also see hits to annotated proteins above

33% id,
48% cov

B0K4A2: alcohol dehydrogenase (EC 1.1.1.1); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacter sp.
Also see hits to annotated proteins above

32% id,
47% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory