Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 31 curated entries in PaperBLAST's database that match '1.2.1.88' as complete word(s).

These curated entries have 22 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS16605: 1-pyrroline-5-carboxylate dehydrogenase
is similar to:
PaperBLAST

Q4DRT8: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Trypanosoma cruzi

50% id,
98% cov

PUT2_YEAST / P07275: Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; P5C dehydrogenase; L-glutamate gamma-semialdehyde dehydrogenase; EC 1.2.1.88 from Saccharomyces cerevisiae
put2 / P07275: Δ1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88) from Saccharomyces cerevisiae
P07275: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Saccharomyces cerevisiae

49% id,
96% cov

AL4A1_HUMAN / P30038: Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; P5C dehydrogenase; Aldehyde dehydrogenase family 4 member A1; L-glutamate gamma-semialdehyde dehydrogenase; EC 1.2.1.88 from Homo sapiens
ALDH4A1 / P30038: Δ1-pyrroline-5-carboxylate dehydrogenase, mitochondrial subunit (EC 1.2.1.88) from Homo sapiens
P30038: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Homo sapiens

48% id,
94% cov

More...

CA265_RS14635: aldehyde dehydrogenase
is similar to:
PaperBLAST

Q9K9B2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Bacillus halodurans

34% id,
90% cov

Q72IB9: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Thermus thermophilus

34% id,
91% cov

Q9RW56: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Deinococcus radiodurans

31% id,
93% cov

More...

CA265_RS24850: aldehyde dehydrogenase
is similar to:
PaperBLAST

Q9RW56: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Deinococcus radiodurans

31% id,
85% cov

Q72IB9: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Thermus thermophilus

30% id,
89% cov

Q65NN2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Bacillus licheniformis

29% id,
85% cov

More...

CA265_RS19780: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

Q9K9B2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Bacillus halodurans

29% id,
90% cov

ROCA2_BACSU / P94391: 1-pyrroline-5-carboxylate dehydrogenase 2; P5C dehydrogenase 2; L-glutamate gamma-semialdehyde dehydrogenase; EC 1.2.1.88 from Bacillus subtilis

26% id,
96% cov

Q9RW56: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Deinococcus radiodurans

27% id,
91% cov

More...

CA265_RS21385: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

Q9RW56: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Deinococcus radiodurans

29% id,
78% cov

Q72IB9: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Thermus thermophilus

26% id,
80% cov

Q65NN2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Bacillus licheniformis

27% id,
65% cov

More...

CA265_RS19850: NADP-dependent glyceraldehyde-3-phosphate dehydrogenase
is similar to:
PaperBLAST

Q65NN2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Bacillus licheniformis

23% id,
94% cov

ROCA2_BACSU / P94391: 1-pyrroline-5-carboxylate dehydrogenase 2; P5C dehydrogenase 2; L-glutamate gamma-semialdehyde dehydrogenase; EC 1.2.1.88 from Bacillus subtilis

23% id,
85% cov

Q9K9B2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Bacillus halodurans

21% id,
92% cov

More...

CA265_RS05705: aldehyde dehydrogenase (NADP(+))
is similar to:
PaperBLAST

Q72IB9: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Thermus thermophilus

26% id,
80% cov

Q9K9B2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Bacillus halodurans

26% id,
77% cov

Q9RW56: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Deinococcus radiodurans

26% id,
76% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory