Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 8 curated entries in PaperBLAST's database that match '1.3.1.13' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS16955: prephenate dehydrogenase
is similar to:
PaperBLAST

TYR1_YEAST / P20049: Prephenate dehydrogenase [NADP(+)]; PRDH; EC 1.3.1.13 from Saccharomyces cerevisiae

47% id,
93% cov

TYR1_SCHPO / O60078: Probable prephenate dehydrogenase [NADP(+)]; PRDH; EC 1.3.1.13 from Schizosaccharomyces pombe
tyr1: prephenate dehydrogenase [NADP+] Tyr1 (predicted); EC 1.3.1.13 from Schizosaccharomyces pombe

44% id,
97% cov

A8AAX2: prephenate dehydrogenase (NADP+) (EC 1.3.1.13) from Ignicoccus hospitalis

27% id,
71% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory