Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 24 curated entries in PaperBLAST's database that match '1.3.8.4'.

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS02820: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

acdH / Q9XCG5: acyl-CoA dehydrogenase subunit (EC 1.3.8.4; EC 1.3.8.5) from Streptomyces avermitilis

42% id,
99% cov

SM_b21121: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Sinorhizobium meliloti

41% id,
99% cov

Shewana3_1672: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Shewanella sp.

40% id,
98% cov

More...

CA265_RS22715: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

Shewana3_1672: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Shewanella sp.

41% id,
97% cov

Ac3H11_2991: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Acidovorax sp.

42% id,
97% cov

acdH / Q9XCG5: acyl-CoA dehydrogenase subunit (EC 1.3.8.4; EC 1.3.8.5) from Streptomyces avermitilis

40% id,
99% cov

More...

CA265_RS09630: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

Shewana3_1672: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Shewanella sp.

36% id,
98% cov

Sama_1362: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Shewanella amazonensis

35% id,
98% cov

AO353_20350: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas fluorescens

34% id,
98% cov

More...

CA265_RS17575: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

AO353_20350: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas fluorescens

35% id,
95% cov

Ac3H11_2991: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Acidovorax sp.

34% id,
94% cov

PS417_17015: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas simiae

34% id,
95% cov

More...

CA265_RS14465: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

acdH / Q9XCG5: acyl-CoA dehydrogenase subunit (EC 1.3.8.4; EC 1.3.8.5) from Streptomyces avermitilis

29% id,
99% cov

Q75N94: isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Aspergillus oryzae

32% id,
88% cov

AO353_20350: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas fluorescens

29% id,
97% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory