Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 39 curated entries in PaperBLAST's database that match '1.4.1.2' as complete word(s).

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS03475: glutamate dehydrogenase
is similar to:
PaperBLAST

P00366: glutamate dehydrogenase (EC 1.4.1.2) from Bos taurus

51% id,
85% cov

P96110: trimer complex (EC 1.4.1.2) from Thermotoga maritima

43% id,
86% cov

DHE2_BACSU / P39633: Catabolic NAD-specific glutamate dehydrogenase RocG; NAD-GDH; Glutamate dehydrogenase; GlutDH; Trigger enzyme RocG; EC 1.4.1.2 from Bacillus subtilis

36% id,
93% cov

More...

CA265_RS13255: leucine dehydrogenase
is similar to:
PaperBLAST

gluD / GB|AAA62756.1: NAD-specific glutamate dehydrogenase; EC 1.4.1.2 from Clostridium difficile
P27346: glutamate dehydrogenase (EC 1.4.1.2) from Clostridioides difficile

33% id,
44% cov

CA265_RS07350: alcohol dehydrogenase
is similar to:
PaperBLAST

Q9Y8I4: glutamate dehydrogenase (EC 1.4.1.2) from Pyrobaculum islandicum

41% id,
14% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory