Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 51 curated entries in PaperBLAST's database that match '1.5.5.2' as complete word(s).

These curated entries have 41 distinct sequences.

Running ublast with E ≤ 0.01

Found 16 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS11605: proline dehydrogenase
is similar to:
PaperBLAST

CA265_RS11605: Proline dehydrogenase (EC 1.5.5.2) from Pedobacter sp.

100% id,
100% cov

Echvi_0119: Proline dehydrogenase (EC 1.5.5.2) from Echinicola vietnamensis

49% id,
98% cov

PROD2_ARATH / Q6NKX1: Proline dehydrogenase 2, mitochondrial; Osmotic stress-induced proline dehydrogenase; Proline oxidase; EC 1.5.5.2 from Arabidopsis thaliana
POX2 / Q6NKX1: proline dehydrogenase 2 (EC 1.5.5.2) from Arabidopsis thaliana

33% id,
79% cov

More...

CA265_RS05155: dihydrolipoyl dehydrogenase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

26% id,
65% cov

CA265_RS24150: dihydrolipoyl dehydrogenase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

23% id,
64% cov

CA265_RS03425: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

Q5JFG2: proline dehydrogenase (EC 1.5.5.2) from Thermococcus kodakarensis

27% id,
54% cov

Q76M73: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

48% id,
12% cov

CA265_RS22000: NAD(P)/FAD-dependent oxidoreductase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

24% id,
61% cov

CA265_RS16605: 1-pyrroline-5-carboxylate dehydrogenase
is similar to:
PaperBLAST

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

31% id,
43% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

28% id,
45% cov

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

28% id,
43% cov

More...

CA265_RS19780: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

27% id,
46% cov

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

28% id,
43% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

27% id,
43% cov

More...

CA265_RS14635: aldehyde dehydrogenase
is similar to:
PaperBLAST

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

28% id,
42% cov

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

28% id,
41% cov

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

27% id,
42% cov

More...

CA265_RS19850: NADP-dependent glyceraldehyde-3-phosphate dehydrogenase
is similar to:
PaperBLAST

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

24% id,
46% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

25% id,
39% cov

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

23% id,
42% cov

More...

CA265_RS24850: aldehyde dehydrogenase
is similar to:
PaperBLAST

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

27% id,
39% cov

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

25% id,
40% cov

HP15_2688: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Marinobacter adhaerens

27% id,
36% cov

More...

CA265_RS21385: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

25% id,
38% cov

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

24% id,
40% cov

HP15_2688: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Marinobacter adhaerens

29% id,
32% cov

More...

CA265_RS05705: aldehyde dehydrogenase (NADP(+))
is similar to:
PaperBLAST

putA / Q88D80: proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.5.2) from Pseudomonas putida

28% id,
29% cov

CA265_RS10015: NAD(P)H-nitrite reductase
is similar to:
PaperBLAST

Q8U1G2: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus furiosus

24% id,
34% cov

O59089: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus horikoshii

29% id,
17% cov

Q5JFG7: proline dehydrogenase (EC 1.5.5.2) from Thermococcus kodakarensis

29% id,
17% cov

CA265_RS12165: hypothetical protein
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

32% id,
22% cov

CA265_RS05715: amino acid dehydrogenase
is similar to:
PaperBLAST

Q76M73: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

38% id,
17% cov

Q5JFG7: proline dehydrogenase (EC 1.5.5.2) from Thermococcus kodakarensis

39% id,
17% cov

O59089: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus horikoshii

37% id,
17% cov

More...

CA265_RS16525: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

Q76M73: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

53% id,
9% cov

Q5JFG7: proline dehydrogenase (EC 1.5.5.2) from Thermococcus kodakarensis

51% id,
9% cov

O59089: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus horikoshii

49% id,
9% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 13 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4157437-4158624 (frame +1) on NZ_CP021237
is similar to:
PaperBLAST

Q5JFG7: proline dehydrogenase (EC 1.5.5.2) from Thermococcus kodakarensis
Also see hits to annotated proteins above

48% id,
10% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory