Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 107 curated entries in PaperBLAST's database that match '2.1.2.1'.

These curated entries have 71 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS19165: serine hydroxymethyltransferase is similar to:	PaperBLAST
R9YJZ9: glycine hydroxymethyltransferase (EC 2.1.2.1) from Shewanella algae	58% id, 97% cov
GLYA_BACSU / P39148: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Bacillus subtilis	56% id, 98% cov
glyA / P77962: glycine hydroxymethyltransferase (EC 2.1.2.1) from Synechocystis sp.	58% id, 95% cov
GLYA_ECOLI / P0A825: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Escherichia coli GlyA / b2551: serine hydroxymethyltransferase (EC 2.1.2.1) from Escherichia coli glyA / RF\|NP_417046: serine hydroxymethyltransferase; EC 2.1.2.1 from Escherichia coli glyA / P0A825: serine hydroxymethyltransferase (EC 2.1.2.1) from Escherichia coli	57% id, 97% cov
GLYA_THET8 / Q5SI56: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Thermus thermophilus Q5SI56: glycine hydroxymethyltransferase (EC 2.1.2.1) from Thermus thermophilus	56% id, 99% cov
I7H6W6: glycine hydroxymethyltransferase (EC 2.1.2.1) from Aphanothece halophytica	57% id, 95% cov
GLYA_SALTY / P0A2E1: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Salmonella typhimurium glyA: serine hydroxymethyltransferase; EC 2.1.2.1 from Salmonella enterica P0A2E1: glycine hydroxymethyltransferase (EC 2.1.2.1) from Salmonella enterica	56% id, 97% cov
GLYA_METBF / Q46A52: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Methanosarcina barkeri Q46A52: glycine hydroxymethyltransferase (EC 2.1.2.1) from Methanosarcina barkeri	55% id, 98% cov
GLYA_STAAC / Q5HE87: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Staphylococcus aureus Q5HE87: glycine hydroxymethyltransferase (EC 2.1.2.1) from Staphylococcus aureus	54% id, 99% cov
PfGW456L13_2685: Glycine hydroxymethyltransferase (EC 2.1.2.1) from Pseudomonas fluorescens	55% id, 97% cov
GLYA_HYDTT / D3DKC4: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-threonine/L-allo-threonine aldolase; EC 2.1.2.1; EC 4.1.2.48 from Hydrogenobacter thermophilus	56% id, 94% cov
L7Y8B0: glycine hydroxymethyltransferase (EC 2.1.2.1) from Pseudomonas plecoglossicida	54% id, 97% cov
B4ECY9: glycine hydroxymethyltransferase (EC 2.1.2.1) from Burkholderia cenocepacia	54% id, 97% cov
A1SUU0: glycine hydroxymethyltransferase (EC 2.1.2.1) from Psychromonas ingrahamii	53% id, 97% cov
A0A069BAT4: glycine hydroxymethyltransferase (EC 2.1.2.1) from Burkholderia pseudomallei	53% id, 97% cov
A8GTI9: glycine hydroxymethyltransferase (EC 2.1.2.1) from Rickettsia rickettsii	53% id, 97% cov
glyA / P34895: serine hydroxymethyltransferase subunit (EC 2.1.2.1) from Hyphomicrobium methylovorum	54% id, 94% cov
Q5M0B4: glycine hydroxymethyltransferase (EC 2.1.2.1) from Streptococcus thermophilus	52% id, 97% cov
GLYA_CAMJE / P24531: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Campylobacter jejuni glyA: serine hydroxymethyltransferase; EC 2.1.2.1 from Campylobacter jejuni	52% id, 98% cov
GLYA2_BURP1 / Q3JGP5: Serine hydroxymethyltransferase 2; SHMT 2; Serine methylase 2; EC 2.1.2.1 from Burkholderia pseudomallei	52% id, 97% cov
P56089: glycine hydroxymethyltransferase (EC 2.1.2.1) from Helicobacter pylori	52% id, 97% cov
GLYA2_MYCTU / P9WGI7: Serine hydroxymethyltransferase 2; SHM2; SHMT 2; Serine methylase 2; EC 2.1.2.1 from Mycobacterium tuberculosis P9WGI7: glycine hydroxymethyltransferase (EC 2.1.2.1) from Mycobacterium tuberculosis	50% id, 96% cov
U5TRK6: glycine hydroxymethyltransferase (EC 2.1.2.1) from Glutamicibacter nicotianae	50% id, 93% cov
GLYA1_MYCTU / P9WGI9: Serine hydroxymethyltransferase 1; SHM1; SHMT 1; Serine methylase 1; EC 2.1.2.1 from Mycobacterium tuberculosis P9WGI9: glycine hydroxymethyltransferase (EC 2.1.2.1) from Mycobacterium tuberculosis	49% id, 93% cov
GLYC4_ARATH / O23254: Serine hydroxymethyltransferase 4; AtSHMT4; Glycine hydroxymethyltransferase 4; Serine methylase 4; EC 2.1.2.1 from Arabidopsis thaliana	48% id, 85% cov
GLYC_RABIT / P07511: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Oryctolagus cuniculus	44% id, 93% cov
Q7SXN1: glycine hydroxymethyltransferase (EC 2.1.2.1) from Danio rerio	46% id, 88% cov
GLYC_MOUSE / P50431: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Mus musculus	45% id, 90% cov
GLYC_BOMMO / Q2F5L3: Serine hydroxymethyltransferase; SHMT; Glycine hydroxymethyltransferase; Serine methylase; bmSHMT; EC 2.1.2.1 from Bombyx mori	45% id, 89% cov
GLYC_CANAL / O13426: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; SHMII; Serine methylase; EC 2.1.2.1 from Candida albicans SHM2: serine hydroxymethyltransferase; EC 2.1.2.1 from Candida albicans	42% id, 95% cov
Q86LS9: glycine hydroxymethyltransferase (EC 2.1.2.1) from Leishmania donovani	45% id, 86% cov
GLYC_SHEEP / P35623: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Ovis aries	46% id, 83% cov
GLYM_HUMAN / P34897: Serine hydroxymethyltransferase, mitochondrial; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Homo sapiens SHMT2 / P34897: serine hydroxymethyltransferase (EC 2.1.2.1) from Homo sapiens P34897: glycine hydroxymethyltransferase (EC 2.1.2.1) from Homo sapiens	43% id, 88% cov
F2QZA4: glycine hydroxymethyltransferase (EC 2.1.2.1) from Komagataella pastoris	42% id, 91% cov
GLYC_HUMAN / P34896: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Homo sapiens SHMT1 / P34896: serine hydroxymethyltransferase, cytosolic (EC 2.1.2.1) from Homo sapiens	46% id, 82% cov
GLYM_MOUSE / Q9CZN7: Serine hydroxymethyltransferase, mitochondrial; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Mus musculus	43% id, 88% cov
GLYC_YEAST / P37291: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Saccharomyces cerevisiae SHM2 / P37291: serine hydroxymethyltransferase, cytosolic (EC 2.1.2.1) from Saccharomyces cerevisiae	42% id, 90% cov
A9LDD9: glycine hydroxymethyltransferase (EC 2.1.2.1) from Danio rerio	45% id, 84% cov
G7ILW0: glycine hydroxymethyltransferase (EC 2.1.2.1) from Medicago truncatula	48% id, 79% cov
GLYM_SCHPO / Q10104: Serine hydroxymethyltransferase, mitochondrial; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Schizosaccharomyces pombe	44% id, 85% cov
A5K8L9: glycine hydroxymethyltransferase (EC 2.1.2.1) from Plasmodium vivax	38% id, 99% cov
SHMT / Q8W4V3: serine hydroxymethyltransferase (EC 2.1.2.1) from Chlamydomonas reinhardtii	43% id, 85% cov
GLYP3_ARATH / Q94JQ3: Serine hydroxymethyltransferase 3, chloroplastic; AtSHM3; AtSHMT3; Glycine hydroxymethyltransferase 3; Serine methylase 3; EC 2.1.2.1 from Arabidopsis thaliana Q94JQ3: glycine hydroxymethyltransferase (EC 2.1.2.1) from Arabidopsis thaliana	46% id, 79% cov
GLYM_YEAST / P37292: Serine hydroxymethyltransferase, mitochondrial; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Saccharomyces cerevisiae SHM1 / P37292: serine hydroxymethyltransferase, mitochondrial (EC 2.1.2.1) from Saccharomyces cerevisiae	43% id, 84% cov
GLYA_PLAF7 / Q8I566: Serine hydroxymethyltransferase; PfSHMTc; EC 2.1.2.1 from Plasmodium falciparum	40% id, 89% cov
GLYC_EREGS / Q75BQ6: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Eremothecium gossypii Q75BQ6: glycine hydroxymethyltransferase (EC 2.1.2.1) from Eremothecium gossypii	39% id, 90% cov
GLYM2_ARATH / Q94C74: Serine hydroxymethyltransferase 2, mitochondrial; AtSHMT2; Glycine hydroxymethyltransferase 2; Serine methylase 2; EC 2.1.2.1 from Arabidopsis thaliana	45% id, 77% cov
GLYM1_ARATH / Q9SZJ5: Serine hydroxymethyltransferase 1, mitochondrial; AtSHMT1; Glycine hydroxymethyltransferase 1; Serine Transhydroxymethyltransferase; STM; Serine methylase 1; EC 2.1.2.1 from Arabidopsis thaliana SHM1 / Q9SZJ5: serine hydroxymethyltransferase (EC 2.1.2.1) from Arabidopsis thaliana	44% id, 77% cov
GLYM_EREGS / Q758F0: Serine hydroxymethyltransferase, mitochondrial; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Eremothecium gossypii	42% id, 80% cov
Q58992: glycine hydroxymethyltransferase (EC 2.1.2.1) from Methanocaldococcus jannaschii	35% id, 93% cov
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CA265_RS15235: 3-methyl-2-oxobutanoate hydroxymethyltransferase is similar to:	PaperBLAST
PANB_CORGL / Q9X712: 3-methyl-2-oxobutanoate hydroxymethyltransferase; Ketopantoate hydroxymethyltransferase; KPHMT; EC 2.1.2.11 from Corynebacterium glutamicum	53% id, 99% cov
PANB_MYCTU / P9WIL7: 3-methyl-2-oxobutanoate hydroxymethyltransferase; Ketopantoate hydroxymethyltransferase; KPHMT; EC 2.1.2.11 from Mycobacterium tuberculosis	47% id, 93% cov
PANB_ECOLI / P31057: 3-methyl-2-oxobutanoate hydroxymethyltransferase; Ketopantoate hydroxymethyltransferase; KPHMT; EC 2.1.2.11 from Escherichia coli PanB / b0134: 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) from Escherichia coli panB / GB\|BAB96711.1: 3-methyl-2-oxobutanoate hydroxymethyltransferase; EC 2.1.2.11 from Escherichia coli panB / P31057: 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) from Escherichia coli	42% id, 100% cov
PANB_THEKO / Q5JCY6: 3-methyl-2-oxobutanoate hydroxymethyltransferase; Ketopantoate hydroxymethyltransferase; KPHMT; EC 2.1.2.11 from Thermococcus kodakarensis panB / Q5JCY6: 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) from Thermococcus kodakarensis	44% id, 92% cov
PANB_EMENI / Q9Y7B6: 3-methyl-2-oxobutanoate hydroxymethyltransferase; Ketopantoate hydroxymethyltransferase; EC 2.1.2.11 from Emericella nidulans pantoB / GB\|AAD37248.1: 3-methyl-2-oxobutanoate hydroxymethyltransferase; EC 2.1.2.11 from Emericella nidulans	48% id, 76% cov
PANB1_ARATH / O82357: 3-methyl-2-oxobutanoate hydroxymethyltransferase 1, mitochondrial; Ketopantoate hydroxymethyltransferase 1; EC 2.1.2.11 from Arabidopsis thaliana PANB1 / O82357: ketopantoate hydroxymethyltransferase (EC 2.1.2.11) from Arabidopsis thaliana	45% id, 76% cov
PANB2_ARATH / Q9M315: 3-methyl-2-oxobutanoate hydroxymethyltransferase 2, mitochondrial; Ketopantoate hydroxymethyltransferase 2; EC 2.1.2.11 from Arabidopsis thaliana	43% id, 75% cov
PANB_YEAST / P38122: 3-methyl-2-oxobutanoate hydroxymethyltransferase; Extracellular matrix protein 31; Ketopantoate hydroxymethyltransferase; EC 2.1.2.11 from Saccharomyces cerevisiae ECM31 / P38122: 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) from Saccharomyces cerevisiae	36% id, 88% cov
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CA265_RS23960: glycine cleavage system protein T is similar to:	PaperBLAST
GCST_ECOLI / P27248: Aminomethyltransferase; Glycine cleavage system T protein; EC 2.1.2.10 from Escherichia coli GcvT / b2905: aminomethyltransferase (EC 2.1.2.10) from Escherichia coli gcvT: aminomethyltransferase; EC 2.1.2.10 from Escherichia coli gcvT / P27248: aminomethyltransferase (EC 2.1.2.10) from Escherichia coli	38% id, 98% cov
BWI76_RS23880: Aminomethyltransferase (EC 2.1.2.10) from Klebsiella michiganensis	38% id, 98% cov
PS417_22370: Aminomethyltransferase (EC 2.1.2.10) from Pseudomonas simiae	37% id, 97% cov
PfGW456L13_1866: Aminomethyltransferase (EC 2.1.2.10) from Pseudomonas fluorescens	37% id, 97% cov
Pf6N2E2_5556: Aminomethyltransferase (EC 2.1.2.10) from Pseudomonas fluorescens	37% id, 97% cov
GCST_YEAST / P48015: Aminomethyltransferase, mitochondrial; Glycine cleavage system T protein; GCVT; Glycine decarboxylase complex subunit T; EC 2.1.2.10 from Saccharomyces cerevisiae	36% id, 96% cov
GCST_CHICK / P28337: Aminomethyltransferase, mitochondrial; Glycine cleavage system T protein; GCVT; EC 2.1.2.10 from Gallus gallus AMT / P28337: aminomethyltransferase (EC 2.1.2.10) from Gallus gallus	35% id, 92% cov
GCST_HUMAN / P48728: Aminomethyltransferase, mitochondrial; Glycine cleavage system T protein; GCVT; EC 2.1.2.10 from Homo sapiens AMT / P48728: aminomethyltransferase (EC 2.1.2.10) from Homo sapiens	34% id, 90% cov
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CA265_RS14405: methionyl-tRNA formyltransferase is similar to:	PaperBLAST
ARNA_ECOLI / P77398: Bifunctional polymyxin resistance protein ArnA; Polymyxin resistance protein PmrI; EC 2.1.2.13; EC 1.1.1.305 from Escherichia coli ArnA / b2255: fused UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronate dehydrogenase (EC 2.1.2.13; EC 1.1.1.305) from Escherichia coli arnA / P77398: fused UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronate dehydrogenase (EC 2.1.2.13; EC 1.1.1.305) from Escherichia coli A0A140N587: UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) (EC 1.1.1.305); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.13) from Escherichia coli	30% id, 46% cov
ARNA_SALTY / O52325: Bifunctional polymyxin resistance protein ArnA; EC 2.1.2.13; EC 1.1.1.305 from Salmonella typhimurium	30% id, 46% cov
ARNA_YERPS / Q93PD8: Bifunctional polymyxin resistance protein ArnA; EC 2.1.2.13; EC 1.1.1.305 from Yersinia pseudotuberculosis	34% id, 39% cov
WBKC_BRUA2 / Q2YML4: GDP-perosamine N-formyltransferase; EC 2.1.2.14 from Brucella abortus WBKC_BRUME / F8WJP6: GDP-perosamine N-formyltransferase; EC 2.1.2.14 from Brucella melitensis	32% id, 39% cov
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CA265_RS02710: phosphoribosylglycinamide formyltransferase is similar to:	PaperBLAST
WBKC_BRUA2 / Q2YML4: GDP-perosamine N-formyltransferase; EC 2.1.2.14 from Brucella abortus WBKC_BRUME / F8WJP6: GDP-perosamine N-formyltransferase; EC 2.1.2.14 from Brucella melitensis	26% id, 50% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory