Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 5 curated entries in PaperBLAST's database that match '2.1.3.11'.

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS18520: acetylornithine carbamoyltransferase
is similar to:
PaperBLAST

Echvi_3849: N-succinylornithine carbamoyltransferase (EC 2.1.3.11) from Echinicola vietnamensis

55% id,
100% cov

SOTC_BACF6 / E1WKT5: N-succinylornithine carbamoyltransferase; N-succinyl-L-ornithine transcarbamylase; SOTCase; EC 2.1.3.11 from Bacteroides fragilis

49% id,
100% cov

argF' / Q8A1E9: N-succinylornithine carbamoyltransferase (EC 2.1.3.11) from Bacteroides thetaiotaomicron
BT3717: N-succinylornithine carbamoyltransferase (EC 2.1.3.11) from Bacteroides thetaiotaomicron
Q8A1E9: N-succinylornithine carbamoyltransferase (EC 2.1.3.11) from Bacteroides fragilis

49% id,
100% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory