Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 38 curated entries in PaperBLAST's database that match '2.3.3.13'.

These curated entries have 31 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS15855: 2-isopropylmalate synthase
is similar to:
PaperBLAST

CA265_RS15855: 2-isopropylmalate synthase (EC 2.3.3.13) from Pedobacter sp.

100% id,
100% cov

Echvi_3833: 2-isopropylmalate synthase (EC 2.3.3.13) from Echinicola vietnamensis

65% id,
97% cov

BT1861: 2-isopropylmalate synthase (EC 2.3.3.13) from Bacteroides thetaiotaomicron

69% id,
75% cov

More...

CA265_RS05025: tryptophan synthase subunit alpha
is similar to:
PaperBLAST

LeuA / b0074: 2-isopropylmalate synthase (EC 2.3.3.13) from Escherichia coli
leuA / P09151: 2-isopropylmalate synthase (EC 2.3.3.13) from Escherichia coli

46% id,
7% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory