Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 22 curated entries in PaperBLAST's database that match '2.3.3.14' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS15855: 2-isopropylmalate synthase
is similar to:
PaperBLAST

AKSA_METJA / Q57926: Homocitrate synthase AksA; (R)-homo(2)citrate synthase; (R)-homo(3)citrate synthase; EC 2.3.3.14; EC 2.3.3.- from Methanocaldococcus jannaschii

41% id,
91% cov

P58637: homocitrate synthase (EC 2.3.3.14) from Nostoc sp.

37% id,
97% cov

D0VY45: homocitrate synthase (EC 2.3.3.14) from Lotus japonicus

48% id,
74% cov

More...

CA265_RS13115: hydroxymethylglutaryl-CoA lyase
is similar to:
PaperBLAST

HOSA_SULAC / Q4J989: Homocitrate synthase; HCS; EC 2.3.3.14 from Sulfolobus acidocaldarius
Q4J989: homocitrate synthase (EC 2.3.3.14) from Sulfolobus acidocaldarius

21% id,
44% cov

HOSA_SULTO / Q971S5: Homocitrate synthase; HCS; EC 2.3.3.14 from Sulfurisphaera tokodaii

21% id,
44% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory