Curated BLAST for Genomes


Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 33 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS08845: citrate (Si)-synthase
is similar to:

PRPC_ABDS2 / O34002: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC; EC from Antarctic bacterium

34% id,
98% cov

PRPC1_CORGL / Q8NSH7: 2-methylcitrate synthase 1; 2-MCS; MCS; Citrate synthase 1; CS; EC; EC from Corynebacterium glutamicum
Q8NSH7: 2-methylcitrate synthase (EC from Corynebacterium glutamicum

33% id,
98% cov

Pf6N2E2_6062: 2-methylcitrate synthase (EC from Pseudomonas fluorescens

33% id,
93% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory