Curated BLAST for Genomes


Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 52 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 34 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS10695: hypothetical protein
is similar to:

PPNP_ECOLI / P0C037: Pyrimidine/purine nucleoside phosphorylase; Adenosine phosphorylase; Cytidine phosphorylase; Guanosine phosphorylase; Inosine phosphorylase; Thymidine phosphorylase; Uridine phosphorylase; Xanthosine phosphorylase; EC; EC from Escherichia coli
PpnP / b0391: nucleoside phosphorylase PpnP (EC; EC; EC; EC; EC from Escherichia coli
ppnP / P0C037: nucleoside phosphorylase PpnP (EC; EC; EC from Escherichia coli

50% id,
99% cov

CA265_RS16505: purine-nucleoside phosphorylase
is similar to:

PUNA_GEOSE / P77834: Purine nucleoside phosphorylase 1; PNP 1; Inosine phosphorylase; Inosine-guanosine phosphorylase; Purine nucleoside phosphorylase I; PNP I; Pu-NPase I; EC from Geobacillus stearothermophilus

48% id,
97% cov

P55859: purine-nucleoside phosphorylase (EC from Bos taurus

47% id,
94% cov

PNPH_MOUSE / P23492: Purine nucleoside phosphorylase; PNP; Inosine phosphorylase; Inosine-guanosine phosphorylase; EC from Mus musculus

46% id,
94% cov


CA265_RS04280: AMP nucleosidase
is similar to:

C8CPR9: purine-nucleoside phosphorylase (EC from Pseudoalteromonas sp.

26% id,
76% cov

Q72IR2: purine-nucleoside phosphorylase (EC from Thermus thermophilus

22% id,
73% cov

CA265_RS09545: phosphorylase
is similar to:

PNPH_SACS2 / P50389: Purine nucleoside phosphorylase; PNP; 5'-methylthioadenosine phosphorylase I; MTA phosphorylase I; MTAPI; EC; EC from Saccharolobus solfataricus

29% id,
52% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory