Curated BLAST for Genomes


Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 18 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS10695: hypothetical protein
is similar to:

PPNP_ECOLI / P0C037: Pyrimidine/purine nucleoside phosphorylase; Adenosine phosphorylase; Cytidine phosphorylase; Guanosine phosphorylase; Inosine phosphorylase; Thymidine phosphorylase; Uridine phosphorylase; Xanthosine phosphorylase; EC; EC from Escherichia coli
PpnP / b0391: nucleoside phosphorylase PpnP (EC; EC; EC; EC; EC from Escherichia coli
ppnP / P0C037: nucleoside phosphorylase PpnP (EC; EC; EC from Escherichia coli

50% id,
99% cov

CA265_RS09545: phosphorylase
is similar to:

Q5XA29: pyrimidine-nucleoside phosphorylase (EC from Streptococcus pyogenes

30% id,
46% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory