Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 114 curated entries in PaperBLAST's database that match '2.7.1.1' as complete word(s).

These curated entries have 79 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS11300: sugar kinase
is similar to:
PaperBLAST

glk / Q9X1I0: glucokinase subunit (EC 2.7.1.1) from Thermotoga maritima

33% id,
99% cov

Q5RLG0: hexokinase (EC 2.7.1.1) from Thermus caldophilus

32% id,
98% cov

Q5SLJ4: hexokinase (EC 2.7.1.1) from Thermus thermophilus

32% id,
98% cov

More...

CA265_RS23280: sugar kinase
is similar to:
PaperBLAST

rokA / Q5GBH5: glucokinase / N-acetylglucosamine kinase / mannokinase (EC 2.7.1.7; EC 2.7.1.1; EC 2.7.1.59) from Bacteroides fragilis

29% id,
95% cov

glk / Q8DVE8: glucokinase subunit (EC 2.7.1.1) from Streptococcus mutans

27% id,
99% cov

glk / Q9X1I0: glucokinase subunit (EC 2.7.1.1) from Thermotoga maritima

30% id,
87% cov

More...

CA265_RS15640: sugar kinase
is similar to:
PaperBLAST

rokA / Q5GBH5: glucokinase / N-acetylglucosamine kinase / mannokinase (EC 2.7.1.7; EC 2.7.1.1; EC 2.7.1.59) from Bacteroides fragilis

28% id,
96% cov

glk / Q8DVE8: glucokinase subunit (EC 2.7.1.1) from Streptococcus mutans

31% id,
84% cov

glcK / P54495: glucokinase (EC 2.7.1.1) from Bacillus subtilis

28% id,
86% cov

More...

CA265_RS14715: hypothetical protein
is similar to:
PaperBLAST

rokA / Q5GBH5: glucokinase / N-acetylglucosamine kinase / mannokinase (EC 2.7.1.7; EC 2.7.1.1; EC 2.7.1.59) from Bacteroides fragilis

24% id,
97% cov

glk / Q9X1I0: glucokinase subunit (EC 2.7.1.1) from Thermotoga maritima

28% id,
45% cov

CA265_RS16270: hypothetical protein
is similar to:
PaperBLAST

rokA / Q5GBH5: glucokinase / N-acetylglucosamine kinase / mannokinase (EC 2.7.1.7; EC 2.7.1.1; EC 2.7.1.59) from Bacteroides fragilis

31% id,
46% cov

glk / Q9X1I0: glucokinase subunit (EC 2.7.1.1) from Thermotoga maritima

28% id,
45% cov

CA265_RS09800: chromosome partitioning protein ParA
is similar to:
PaperBLAST

HXKA_YEAST / P04806: Hexokinase-1; Hexokinase PI; Hexokinase-A; EC 2.7.1.1 from Saccharomyces cerevisiae
HXK1 / P04806: hexokinase 1 (EC 2.7.1.4; EC 2.7.1.1; EC 2.7.1.7) from Saccharomyces cerevisiae
P04806: hexokinase (EC 2.7.1.1) from Saccharomyces cerevisiae

23% id,
49% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory