Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 25 curated entries in PaperBLAST's database that match '2.7.1.17' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS19710: carbohydrate kinase
is similar to:
PaperBLAST

BT0792: xylulokinase (EC 2.7.1.17) from Bacteroides thetaiotaomicron

56% id,
98% cov

Echvi_1875: xylulokinase (EC 2.7.1.17) from Echinicola vietnamensis

51% id,
99% cov

Q9WXX1: xylulokinase (EC 2.7.1.17) from Thermotoga maritima

31% id,
97% cov

More...

CA265_RS07870: glycerol kinase
is similar to:
PaperBLAST

Q9WXX1: xylulokinase (EC 2.7.1.17) from Thermotoga maritima

25% id,
98% cov

BWI76_RS27020: Xylulose kinase (EC 2.7.1.17) from Klebsiella michiganensis

25% id,
89% cov

XYLB_ECOLI / P09099: Xylulose kinase; XK; Xylulokinase; 1-deoxy-D-xylulokinase; EC 2.7.1.17; EC 2.7.1.- from Escherichia coli
XylB / b3564: xylulokinase (EC 2.7.1.17) from Escherichia coli
xylB / GB|AAC76588.1: xylulokinase; EC 2.7.1.17 from Escherichia coli
xylB / P09099: xylulokinase (EC 2.7.1.17) from Escherichia coli

24% id,
94% cov

CA265_RS08625: ribulokinase
is similar to:
PaperBLAST

XYLB_LEVBR / P35850: Xylulose kinase; Xylulokinase; EC 2.7.1.17 from Levilactobacillus brevis

24% id,
100% cov

Dshi_1997: Xylulose kinase (EC 2.7.1.17) from Dinoroseobacter shibae

25% id,
22% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory