Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 41 curated entries in PaperBLAST's database that match '2.7.1.2' as complete word(s).

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS06125: galactokinase
is similar to:
PaperBLAST

B1KRG2: glucokinase (EC 2.7.1.2) from Shewanella woodyi

39% id,
95% cov

B1KD89: glucokinase (EC 2.7.1.2) from Shewanella woodyi

40% id,
90% cov

B1KDE7: glucokinase (EC 2.7.1.2) from Shewanella woodyi

35% id,
97% cov

CA265_RS09565: galactokinase
is similar to:
PaperBLAST

B1KRG2: glucokinase (EC 2.7.1.2) from Shewanella woodyi

35% id,
97% cov

B1KDE7: glucokinase (EC 2.7.1.2) from Shewanella woodyi

35% id,
95% cov

B1KD89: glucokinase (EC 2.7.1.2) from Shewanella woodyi

34% id,
92% cov

CA265_RS11300: sugar kinase
is similar to:
PaperBLAST

GLK_THEMA / Q9X1I0: Glucokinase; ATP-dependent glucokinase; ATP-GLK; Glucose kinase; EC 2.7.1.2 from Thermotoga maritima

33% id,
99% cov

Q8RDE9: glucokinase (EC 2.7.1.2) from Caldanaerobacter subterraneus

33% id,
99% cov

GLK_STRCO / P0A4E1: Glucokinase; Glucose kinase; ORF 3; EC 2.7.1.2 from Streptomyces coelicolor
glkA: glucokinase; EC 2.7.1.2 from Streptomyces coelicolor
P0A4E1: glucokinase (EC 2.7.1.2) from Streptomyces coelicolor

32% id,
96% cov

More...

CA265_RS15640: sugar kinase
is similar to:
PaperBLAST

glk: glucokinase; EC 2.7.1.2 from Bacillus megaterium
O31392: glucokinase (EC 2.7.1.2) from Priestia megaterium

30% id,
100% cov

Q8RDE9: glucokinase (EC 2.7.1.2) from Caldanaerobacter subterraneus

27% id,
100% cov

H6UH58: glucokinase (EC 2.7.1.2) from Staphylococcus aureus

27% id,
96% cov

More...

CA265_RS23280: sugar kinase
is similar to:
PaperBLAST

Q8RDE9: glucokinase (EC 2.7.1.2) from Caldanaerobacter subterraneus

29% id,
98% cov

glk: glucokinase; EC 2.7.1.2 from Bacillus megaterium
O31392: glucokinase (EC 2.7.1.2) from Priestia megaterium

28% id,
97% cov

GLK_THEMA / Q9X1I0: Glucokinase; ATP-dependent glucokinase; ATP-GLK; Glucose kinase; EC 2.7.1.2 from Thermotoga maritima

30% id,
87% cov

More...

CA265_RS09800: chromosome partitioning protein ParA
is similar to:
PaperBLAST

PPGK_MYCTA / A5U654: Polyphosphate glucokinase; Poly(P) glucokinase; ATP-dependent glucokinase; Polyphosphate--glucose phosphotransferase; EC 2.7.1.63; EC 2.7.1.2 from Mycobacterium tuberculosis
PPGK_MYCTU / P9WIN1: Polyphosphate glucokinase; Poly(P) glucokinase; ATP-dependent glucokinase; Polyphosphate--glucose phosphotransferase; EC 2.7.1.63; EC 2.7.1.2 from Mycobacterium tuberculosis

30% id,
91% cov

CA265_RS14715: hypothetical protein
is similar to:
PaperBLAST

Sama_1405: glucokinase (EC 2.7.1.2) from Shewanella amazonensis

23% id,
96% cov

Sama_2231: glucokinase (EC 2.7.1.2) from Shewanella amazonensis

22% id,
98% cov

H6UH58: glucokinase (EC 2.7.1.2) from Staphylococcus aureus

23% id,
95% cov

More...

CA265_RS16270: hypothetical protein
is similar to:
PaperBLAST

H6UH58: glucokinase (EC 2.7.1.2) from Staphylococcus aureus

26% id,
75% cov

GLK_THEMA / Q9X1I0: Glucokinase; ATP-dependent glucokinase; ATP-GLK; Glucose kinase; EC 2.7.1.2 from Thermotoga maritima

28% id,
45% cov

CA265_RS01270: hypothetical protein
is similar to:
PaperBLAST

PPGK_MYCTA / A5U654: Polyphosphate glucokinase; Poly(P) glucokinase; ATP-dependent glucokinase; Polyphosphate--glucose phosphotransferase; EC 2.7.1.63; EC 2.7.1.2 from Mycobacterium tuberculosis
PPGK_MYCTU / P9WIN1: Polyphosphate glucokinase; Poly(P) glucokinase; ATP-dependent glucokinase; Polyphosphate--glucose phosphotransferase; EC 2.7.1.63; EC 2.7.1.2 from Mycobacterium tuberculosis

28% id,
54% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory