Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 172 curated entries in PaperBLAST's database that match '2.7.1.4'.

These curated entries have 132 distinct sequences.

Running ublast with E ≤ 0.01

Found 14 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS19865: carbohydrate kinase
is similar to:
PaperBLAST

CA265_RS19865: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) from Pedobacter sp.

100% id,
100% cov

2afbA / Q9WXS2: Crystal structure of 2-dehydro-3- deoxygluconokinase (ec 2.7.1.45) (tm0067) from thermotoga maritima at 2.05 a resolution

30% id,
97% cov

Q9WXS2: 2-dehydro-3-deoxygluconokinase (EC 2.7.1.45) from Thermotoga maritima

30% id,
96% cov

More...

CA265_RS24160: bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase
is similar to:
PaperBLAST

THID_ECOLI / P76422: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; Hydroxymethylpyrimidine kinase; HMP kinase; Hydroxymethylpyrimidine phosphate kinase; HMP-P kinase; HMP-phosphate kinase; HMPP kinase; EC 2.7.1.49; EC 2.7.4.7 from Escherichia coli
ThiJ / b2103: bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase (EC 2.7.1.49; EC 2.7.4.7) from Escherichia coli
thiD / P76422: bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase (EC 2.7.1.49; EC 2.7.4.7) from Escherichia coli
P76422: hydroxymethylpyrimidine kinase (EC 2.7.1.49) from Escherichia coli

43% id,
98% cov

THID_SALTY / P55882: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; Hydroxymethylpyrimidine kinase; HMP kinase; Hydroxymethylpyrimidine phosphate kinase; HMP-P kinase; HMP-phosphate kinase; HMPP kinase; EC 2.7.1.49; EC 2.7.4.7 from Salmonella typhimurium
P55882: hydroxymethylpyrimidine kinase (EC 2.7.1.49) from Salmonella enterica

42% id,
98% cov

P66915: hydroxymethylpyrimidine kinase (EC 2.7.1.49); phosphooxymethylpyrimidine kinase (EC 2.7.4.7) from Staphylococcus aureus

43% id,
93% cov

More...

CA265_RS18740: pyruvate kinase
is similar to:
PaperBLAST

KPYK_MYCTU / P9WKE5: Pyruvate kinase; PK; EC 2.7.1.40 from Mycobacterium tuberculosis

42% id,
98% cov

KPYK1_ECOLI / P0AD61: Pyruvate kinase I; PK-1; EC 2.7.1.40 from Escherichia coli
PykF / b1676: pyruvate kinase I (EC 2.7.1.40) from Escherichia coli
pykF / P0AD61: pyruvate kinase I (EC 2.7.1.40) from Escherichia coli
P0AD62: pyruvate kinase (EC 2.7.1.40) from Escherichia coli

39% id,
100% cov

KPYK_THEMA / Q9WY51: Pyruvate kinase; PK; EC 2.7.1.40 from Thermotoga maritima

39% id,
99% cov

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CA265_RS18205: hypothetical protein
is similar to:
PaperBLAST

Echvi_2804: Fructokinase (EC 2.7.1.4) from Echinicola vietnamensis

40% id,
96% cov

C4M2I2: fructokinase (EC 2.7.1.4) from Entamoeba histolytica

38% id,
96% cov

G4T023: fructokinase (EC 2.7.1.4) from Methylomicrobium alcaliphilum

28% id,
94% cov

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CA265_RS06315: uridine kinase
is similar to:
PaperBLAST

URK_STRP6 / Q5XBI8: Uridine kinase; Cytidine monophosphokinase; Uridine monophosphokinase; EC 2.7.1.48 from Streptococcus pyogenes

31% id,
98% cov

Q5SKR5: uridine kinase (EC 2.7.1.48) from Thermus thermophilus

34% id,
89% cov

Udk / b2066: uridine/cytidine kinase (EC 2.7.1.48; EC 2.7.1.213) from Escherichia coli
udk / P0A8F4: uridine/cytidine kinase (EC 2.7.1.48) from Escherichia coli

28% id,
85% cov

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CA265_RS24255: sugar kinase
is similar to:
PaperBLAST

TK1843 / Q5JEK6: cytidine kinase (EC 2.7.1.48) from Thermococcus kodakarensis

31% id,
88% cov

CA265_RS09565: galactokinase
is similar to:
PaperBLAST

GALAK_ARATH / Q8VYG2: Galacturonokinase; D-galacturonic acid-1-P kinase; EC 2.7.1.44 from Arabidopsis thaliana

28% id,
87% cov

ARAK_ARATH / O23461: L-arabinokinase; AtISA1; EC 2.7.1.46 from Arabidopsis thaliana
ARA1 / O23461: arabinose kinase (EC 2.7.1.46) from Arabidopsis thaliana

32% id,
11% cov

CA265_RS06125: galactokinase
is similar to:
PaperBLAST

GALAK_ARATH / Q8VYG2: Galacturonokinase; D-galacturonic acid-1-P kinase; EC 2.7.1.44 from Arabidopsis thaliana

27% id,
88% cov

ARAK_ARATH / O23461: L-arabinokinase; AtISA1; EC 2.7.1.46 from Arabidopsis thaliana
ARA1 / O23461: arabinose kinase (EC 2.7.1.46) from Arabidopsis thaliana

27% id,
15% cov

CA265_RS23280: sugar kinase
is similar to:
PaperBLAST

MAK_ECOLI / P23917: Fructokinase; D-fructose kinase; Manno(fructo)kinase; EC 2.7.1.4 from Escherichia coli
Mak / b0394: fructokinase (EC 2.7.1.7; EC 2.7.1.4) from Escherichia coli
mak / P23917: fructokinase (EC 2.7.1.7; EC 2.7.1.4) from Escherichia coli

24% id,
97% cov

SCRK_BACSU / O05510: Putative fructokinase; Glucomannan utilization protein E; EC 2.7.1.4 from Bacillus subtilis
O05510: fructokinase (EC 2.7.1.4) from Bacillus subtilis

26% id,
77% cov

CA265_RS11300: sugar kinase
is similar to:
PaperBLAST

SCRK_BACSU / O05510: Putative fructokinase; Glucomannan utilization protein E; EC 2.7.1.4 from Bacillus subtilis
O05510: fructokinase (EC 2.7.1.4) from Bacillus subtilis

23% id,
96% cov

Ga0059261_1776: Fructokinase (EC 2.7.1.4) from Sphingomonas koreensis

23% id,
86% cov

CA265_RS19460: uracil phosphoribosyltransferase
is similar to:
PaperBLAST

UKL2_ARATH / Q9LK34: Uridine/cytidine kinase UKL1, chloroplastic; Uridine kinase-like protein 2; Uridine/cytidine kinase 2; EC 2.7.1.48 from Arabidopsis thaliana

27% id,
44% cov

UKL1_ARATH / Q9FKS0: Uridine/cytidine kinase UKL1, chloroplastic; AtUK; Uridine kinase-like protein 1; Uridine/cytidine kinase 1; EC 2.7.1.48 from Arabidopsis thaliana
Q9FKS0: uracil phosphoribosyltransferase (EC 2.4.2.9); uridine kinase (EC 2.7.1.48) from Arabidopsis thaliana

28% id,
39% cov

CA265_RS09800: chromosome partitioning protein ParA
is similar to:
PaperBLAST

HXK1 / P04806: hexokinase 1 (EC 2.7.1.4; EC 2.7.1.1; EC 2.7.1.7) from Saccharomyces cerevisiae

23% id,
49% cov

CA265_RS07870: glycerol kinase
is similar to:
PaperBLAST

FGGY_HUMAN / Q96C11: FGGY carbohydrate kinase domain-containing protein; D-ribulokinase FGGY; EC 2.7.1.47 from Homo sapiens
FGGY / Q96C11: FGGY carbohydrate kinase domain-containing protein (EC 2.7.1.47) from Homo sapiens

24% id,
37% cov

CA265_RS18695: phosphoenolpyruvate synthase
is similar to:
PaperBLAST

P51181: pyruvate kinase (EC 2.7.1.40) from Bacillus licheniformis

34% id,
22% cov

KPYK_GEOSE / Q02499: Pyruvate kinase; PK; ATP:pyruvate 2-O-phosphotransferase; EC 2.7.1.40 from Geobacillus stearothermophilus
Q02499: pyruvate kinase (EC 2.7.1.40) from Geobacillus stearothermophilus

45% id,
15% cov

P51182: pyruvate kinase (EC 2.7.1.40) from Sporosarcina psychrophila

39% id,
17% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 14 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2366785-2367963 (frame +1) on NZ_CP021237
is similar to:
PaperBLAST

GALAK_ARATH / Q8VYG2: Galacturonokinase; D-galacturonic acid-1-P kinase; EC 2.7.1.44 from Arabidopsis thaliana
Also see hits to annotated proteins above

28% id,
92% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory