Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter sp. GW460-11-11-14-LB5 (Pedo557)

Found 22 curated entries in PaperBLAST's database that match '2.7.1.59' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Pedobacter sp. GW460-11-11-14-LB5, or try another query

CA265_RS11300: sugar kinase
is similar to:
PaperBLAST

CA265_RS11300: N-acetylglucosamine kinase (EC 2.7.1.59) from Pedobacter sp.

100% id,
100% cov

rokA / Q5GBH5: glucokinase / N-acetylglucosamine kinase / mannokinase (EC 2.7.1.7; EC 2.7.1.1; EC 2.7.1.59) from Bacteroides fragilis

30% id,
97% cov

CA265_RS23280: sugar kinase
is similar to:
PaperBLAST

rokA / Q5GBH5: glucokinase / N-acetylglucosamine kinase / mannokinase (EC 2.7.1.7; EC 2.7.1.1; EC 2.7.1.59) from Bacteroides fragilis

29% id,
95% cov

CA265_RS15640: sugar kinase
is similar to:
PaperBLAST

rokA / Q5GBH5: glucokinase / N-acetylglucosamine kinase / mannokinase (EC 2.7.1.7; EC 2.7.1.1; EC 2.7.1.59) from Bacteroides fragilis

28% id,
96% cov

AGAK_SHESA / A0KYQ6: N-acetylgalactosamine kinase AgaK; GalNAc kinase; N-acetylglucosamine kinase; GlcNAc kinase; EC 2.7.1.-; EC 2.7.1.59 from Shewanella sp.

30% id,
82% cov

NAGK_SALTY / Q8ZPZ9: N-acetyl-D-glucosamine kinase; GlcNAc kinase; EC 2.7.1.59 from Salmonella typhimurium

23% id,
94% cov

More...

CA265_RS14715: hypothetical protein
is similar to:
PaperBLAST

CA265_RS11300: N-acetylglucosamine kinase (EC 2.7.1.59) from Pedobacter sp.

26% id,
95% cov

rokA / Q5GBH5: glucokinase / N-acetylglucosamine kinase / mannokinase (EC 2.7.1.7; EC 2.7.1.1; EC 2.7.1.59) from Bacteroides fragilis

24% id,
97% cov

NAGK_SALTY / Q8ZPZ9: N-acetyl-D-glucosamine kinase; GlcNAc kinase; EC 2.7.1.59 from Salmonella typhimurium

32% id,
46% cov

More...

CA265_RS16270: hypothetical protein
is similar to:
PaperBLAST

rokA / Q5GBH5: glucokinase / N-acetylglucosamine kinase / mannokinase (EC 2.7.1.7; EC 2.7.1.1; EC 2.7.1.59) from Bacteroides fragilis

31% id,
46% cov

CA265_RS02190: hypothetical protein
is similar to:
PaperBLAST

MURK_CLOAB / Q97ML3: N-acetylmuramic acid/N-acetylglucosamine kinase; MurNAc/GlcNAc kinase; Murein sugar kinase; EC 2.7.1.-; EC 2.7.1.59 from Clostridium acetobutylicum

29% id,
41% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory